BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906135
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14090.1 | Symbols: | pseudogene, expressed protein | chr2:... 449 1e-125
AT2G14070.1 | Symbols: | wound-responsive protein-related | ch... 241 1e-62
AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein | ... 228 7e-59
AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 78.7 8e-14
> AT2G14090.1 | Symbols: | pseudogene, expressed protein | chr2:5930000-5931585
REVERSE LENGTH=1586
Length=1586
Score = 449 bits (243), Expect = 1e-125
Identities = 286/307 (93%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 216 GAACCGCTCTGTGTCTTCCAAAACCCTTAAGAGATTGAAGCTATCTTGTATAGAATATGA 275
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 577 GAACCGCTCTGTGTCTTCCAAAACCTTTAAGAGATTGAAGCTATGTTGTATAGACTATGA 636
Query 276 TCAGATTCCGGATACTGTTTCATTTGATACACCAAATCTTGTCTCCTTGGAATACTCTGA 335
||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 637 TCAGAATCCGGATACTGTTTCATTTGATACACCAAATCTAGTTTACTTGGAATACTCTGA 696
Query 336 TTATGTTGCGGACAAGTACCCGAGAGTGAATTTTTGTTCGCTTTTTGAAGCTTTTCTCAA 395
||| ||||||| |||||||||||||||||| |||||||||||| |||||||| ||||||
Sbjct 697 TTACGTTGCGGTCAAGTACCCGAGAGTGAAGTTTTGTTCGCTTGTTGAAGCTAGTCTCAA 756
Query 396 TCTTCATATGACATATGATCAGTGTGCACAAGCAAGCTATGGAGATTTGGTTGGTAATG- 454
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 757 TCTTCAAATGACGTATGATCAGTGTGCACAAGCAAGCTATGGATTTTTGGTTGGTAATGC 816
Query 455 TAACAGATTTTCTTATGGGAGTAAGCAATGTTCAGATCCTTCACTTATCTGACAGGTCTC 514
| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 817 T-ACAGATTTTCTTATGGGAGTAAGCAATGTTCAGATCCTTCACTTATCTGATAAGTCTC 875
Query 515 TTGAGGT 521
|||||||
Sbjct 876 TTGAGGT 882
Score = 257 bits (139), Expect = 1e-67
Identities = 192/217 (88%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 518 AGGTCGTAAAGGTATGGAAGTTTGGTGaaaaaaaTTATT-ACTATAACAAGGATATGAAA 576
||||||||||||||| ||||||||||| ||| || || || | || | |||||||||
Sbjct 1294 AGGTCGTAAAGGTATTGAAGTTTGGTG-AAACTTTTTTTAAC--T-ACGATGATATGAAA 1349
Query 577 AAGCAGATAGAGCAGGTCAAGCACTTTCTAGAGACAATGCCGAATCTTGAACAAATGATA 636
|| ||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1350 AAACAGTTAGAGCAGGACAAACATTTTCTAGAGACAATGCCGAATCTTGAACAAATGATA 1409
Query 637 TTATACTACGATACACCATCCGATGACGATGTACTTGAAGTTTCCAAGCAACTTCAGATG 696
||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 1410 TTATACTACAATACACCATACGATAACGATGTGCTTGAAGTTTCCAAGCAACTTCAGATA 1469
Query 697 CTTACTAGAGTAGCTTCGGCTAAATGCAAGATCCAAG 733
||| ||||||||||||| ||||||||||||||||||
Sbjct 1470 CTTCCTAGAGTAGCTTCAACTAAATGCAAGATCCAAG 1506
Score = 174 bits (94), Expect = 1e-42
Identities = 125/139 (90%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 23 CACATATTATCATTCCTTCCTATAAACGATTCTGCTTTGACTTCAGTCCTCTCGAAAAAG 82
||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||
Sbjct 58 CACATATTATCATTCCTTCCTCTAAAAGATTCTGCTTTGACTTCACTTCTCTCGAAAAAG 117
Query 83 TGGCGTTATCTCTTTGCTTTCAGACCAAAACTTG-TTTTGATGGCTCGGTTAATAATATG 141
||||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct 118 TGGCGTTATCTCTTTGCTTTCAGACCAAATCTTGATTTTGATGGCTTAGTTAATC-TA-- 174
Query 142 CAT-ATCGTGAAGATGAGT 159
||| ||||||||||| |||
Sbjct 175 CATCATCGTGAAGAT-AGT 192
> AT2G14070.1 | Symbols: | wound-responsive protein-related |
chr2:5921881-5922990 FORWARD LENGTH=591
Length=591
Score = 241 bits (130), Expect = 1e-62
Identities = 153/164 (93%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 571 ATGAAAAAGCAGATAGAGCAGGTCAAGCACTTTCTAGAGACAATGCCGAATCTTGAACAA 630
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGCAGATAGAGCAGGTCAAACAATTTCTAGAGACAATGCCGAATCTTGAACAA 60
Query 631 ATGATATTATACTACGATACACCATCCGATGACGATGTACTTGAAGTTTCCAAGCAACTT 690
||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||
Sbjct 61 ATGATATTATACTACGATACACCATACGATGACGATGTGCTTGACGTTTCCATGCAACTT 120
Query 691 CAGATGCTT-ACTAGAGTAGCTTCGGCTAAATGCAAGATCCAAG 733
|| |||||| | |||||| ||||| |||||||||||||||||||
Sbjct 121 CAAATGCTTCA-TAGAGTGGCTTCAGCTAAATGCAAGATCCAAG 163
> AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21901570-21903284 REVERSE LENGTH=1434
Length=1434
Score = 228 bits (123), Expect = 7e-59
Identities = 246/303 (81%), Gaps = 17/303 (6%)
Strand=Plus/Plus
Query 213 TTGGAACCGCTCTGTGTCTTCCAAAACCCTTAAGAGATTGAA-GCTATCTTGTATAGAAT 271
|||||||||||||||||||||||||||||| |||||| | || ||||| |||| ||| |
Sbjct 504 TTGGAACCGCTCTGTGTCTTCCAAAACCCTCAAGAGACT-AACGCTATGGTGTACAGAGT 562
Query 272 ---ATGATCAGATTCCGGATACTGTTTCATTTGATACACCAAATCTTGTCTCCTTGGAAT 328
||||| | | |||| ||| ||||| |||||||||||||||||||||| |||| |||
Sbjct 563 CGTATGATAAAAATCCGCATAGTGTTTTGTTTGATACACCAAATCTTGTCTACTTGAAAT 622
Query 329 ACTCTGATTATGTTGCGGACAA-GTACCCGAGAGTGAATTTTTGTTCGCTTTTTGAAGCT 387
|||| ||||||||||||| ||| ||| || | ||||||||| |||||||| |||| ||
Sbjct 623 ACTCCGATTATGTTGCGG-CAAAGTATCCAAAAGTGAATTTCAGTTCGCTTGTTGATGCC 681
Query 388 TTTCTCAATCTT-CATATGACATA-TGATCAGTG-TGCACAA-GCAAGCTATGGA-GATT 442
| | |||| || |||||| | ||||||| | |||| || |||||||||| | | ||
Sbjct 682 ACTATTGGTCTTGCA-ATGACA-AGTGATCAG-GATGCA-AATGCAAGCTATG-ATGCTT 736
Query 443 TGGTTGGTAATGTAACAGATTTTCTTATGGGAGTAAGCAATGTTCAGATCCTTCACTTAT 502
|||| || |||| |||||| ||||| |||||| || ||||||||||||||||| |||||
Sbjct 737 TGGTCGGCAATGCAACAGACTTTCTAATGGGAATATGCAATGTTCAGATCCTTTGCTTAT 796
Query 503 CTG 505
|||
Sbjct 797 CTG 799
> AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364
REVERSE LENGTH=1515
Length=1515
Score = 78.7 bits (42), Expect = 8e-14
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 575 AAAAGCAGATAGAG-CAGGTCAAGCACTTT-CTAGAGACAATGCCGAATCTTGAACAAAT 632
|||||||| | ||| | |||||| | ||| || ||||||||||||||||||||||||||
Sbjct 1214 AAAAGCAGCTGGAGTTA-GTCAAGTA-TTTCCTGGAGACAATGCCGAATCTTGAACAAAT 1271
Query 633 GATATTATACTACGATACAC 652
|||||| ||||| ||||||
Sbjct 1272 GATATTGCACTACAATACAC 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5