BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906183 Length=486 Score E Sequences producing significant alignments: (Bits) Value AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-relate... 684 0.0 AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related ... 527 4e-149 > AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-related protein 1 | chr2:6225535-6226224 REVERSE LENGTH=690 Length=690 Score = 684 bits (370), Expect = 0.0 Identities = 448/486 (92%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 1 ATGAAAGTCACTAGCTATTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60 ||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96 Query 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156 Query 121 CGGTCGCAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGG 180 || |||||| |||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216 Query 181 AGCTACGCAGAG-AACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGG 239 | ||||||| | ||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 217 AACTACGCAAACCAAC-TAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGG 275 Query 240 GGAGAACTTGGCCG-GTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGG 298 |||||||||||| | ||| |||||||||| ||||| || ||||| ||||||||||||| Sbjct 276 GGAGAACTTGGCAAAG-AGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGG 334 Query 299 TTAACGAGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACT 358 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 335 TTAACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACT 394 Query 359 ACACTCAAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACA 418 ||||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 395 ACACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACA 454 Query 419 ATGGTGGAACCATCATTAGTTGCAATTATAATCCTCCGGGGAACTATGCGAACCAGAAGC 478 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 455 ATGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAGC 514 Query 479 CTTACT 484 |||||| Sbjct 515 CTTACT 520 > AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related gene 1 | chr2:6241704-6242463 REVERSE LENGTH=760 Length=760 Score = 527 bits (285), Expect = 4e-149 Identities = 419/483 (87%), Gaps = 12/483 (2%) Strand=Plus/Plus Query 10 ACTAGCTATTCTCGCA-TTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTTGTTGTTCC 68 ||| |||||||||| | || |||| |||| | || |||||||||||||||||| |||| Sbjct 44 ACTGGCTATTCTCG-ATTTTTAATCGTCTTTGTAGCTCTTGTAGGTGCTCTTGTTCTTCC 102 Query 69 CTCGAAGGCTCAAGACAG-CCAGCAAGACTATGTAAATGCTCACAACCAGGCACG-GTCG 126 |||||| |||||||| || ||| ||||| ||| ||| | ||||||||||||||| | | Sbjct 103 CTCGAAAGCTCAAGATAGCCCA-CAAGATTATCTAAGGGTTCACAACCAGGCACGAGGAG 161 Query 127 CAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGGAGCTAC 186 | |||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||| Sbjct 162 C-GGTAGGCGTAGGTCCCATGCAGTGGGACGAGAGGGTTGCAGCCTATGCTCGGAGCTAC 220 Query 187 GCAG-AGAACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGGGGAGAA 245 |||| | || |||| |||| ||||||||||| |||| || ||||||||||||||||| || Sbjct 221 GCAGAACAA-CTAAGAGGCAACTGCAGACTCATACACTCTGGTGGGCCTTACGGGGAAAA 279 Query 246 CTTGGCC-GGTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGGTTAACG 304 ||| ||| || ||||||||||||| ||||||||| | || |||||| ||||||||| || Sbjct 280 CTTAGCCTGG-GGTAGCGGTGACTTGTCTGGCGTCTCCGCCGTGAACATGTGGGTTAGCG 338 Query 305 AGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACTACACTC 364 |||||||||||||||||||| | | ||||||||||| |||||||| ||||||||||||| Sbjct 339 AGAAGGCTAACTACAACTACGCTGCGAACACGTGCAATGGAGTTTGTGGTCACTACACTC 398 Query 365 AAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 424 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 AAGTTGTTTGGAGAAAGTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 458 Query 425 GAACCATCATTAGTTGCAATTATAATCCTCCG-GGGAACTATGCGAACCAGAAGCCTTAC 483 ||||||| || |||||||| ||| |||||| | ||||| |||| |||| ||||||| ||| Sbjct 459 GAACCATAATCAGTTGCAACTATGATCCTC-GTGGGAATTATGTGAACGAGAAGCCATAC 517 Query 484 TAA 486 ||| Sbjct 518 TAA 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23157941767 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5