BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906352
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransfer... 1077 0.0
> AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransferase
SET7/9 family protein | chr1:29185899-29187825 REVERSE
LENGTH=1765
Length=1765
Score = 1077 bits (583), Expect = 0.0
Identities = 649/681 (95%), Gaps = 4/681 (1%)
Strand=Plus/Plus
Query 1 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 385
Query 61 CGATCGTCGATTCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAATCTCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 386 CGATCGTCGATCCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAACCTCT 445
Query 121 TACCCCCGCCGTGAACAAGATCTAGAAGCCGGTGAGAAAGAAGAGAAACAGAGGAGAAGA 180
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 446 CACCACCGCCGTGAACAAGATCTCGAAGCCGGTGAGAAAGAGGAAAAACAGAGGAGGAGA 505
Query 181 AAACCGGTTCAATCATTCGGGTCTATTAACCGAATTAAACCGGGTCTCGCATTCACACTC 240
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 506 AAACCGGTTAAATCATTCGGGTCAATGAACCGAATTAAACCGGGTCTCGCATTCACACTC 565
Query 241 GCTTGTCTCTCTTTCCTAAGTCTCTCGTCTTTCTTACTATTCTTCGTTGATGAGATTTTT 300
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 566 GCTTGTCTCTCTTTCCTGAGTCTCTCATCTTTCTTACTGTTCTTCGTTGATGAGATTTTC 625
Query 301 ACGTCGGAGAATCTGTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCATCG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 626 ACGTCGGAGAATCTCTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCGTCG 685
Query 361 AGAAACATGGCGGTTATTAACCAAATCGTAATCGCAATCAAACAGATTCGCGTAAGGTCT 420
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 686 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAGCAGATTCGTGTAAGGTCT 745
Query 421 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATACAAAACCGGAACCG 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 746 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATTCAAAACCGGAACCG 805
Query 481 ATCAAAGAAGAAGAA-CAGAGACTGGTCGTCAAAGAAGGAGTTCAATAT-TTTAGCAATG 538
||||||||||||||| || ||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 806 ATCAAAGAAGAAGAAACA-AGACTTGTCGTTAAAGAAGGAGTTCAAT-TCTTTAGCAATG 863
Query 539 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTGTACTATT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 864 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTTTATTATT 923
Query 599 ATTTCGTTAATGGAAGATATGAAGTAGATTGGATCAATGGAAGATACGATGGTTATGGAA 658
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 924 ATTACGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGGTACGATGGTTATGGAA 983
Query 659 TCGAGTGTTGGTCTAAAGGAA 679
|||||||||||||||||||||
Sbjct 984 TCGAGTGTTGGTCTAAAGGAA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5