BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906790 Length=1443 Score E Sequences producing significant alignments: (Bits) Value AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 375 5e-103 AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 219 8e-56 AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 202 8e-51 AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 150 3e-35 AT1G62810.1 | Symbols: | Copper amine oxidase family protein |... 91.6 2e-17 > AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:17050631-17052189 FORWARD LENGTH=1494 Length=1494 Score = 375 bits (203), Expect = 5e-103 Identities = 407/502 (81%), Gaps = 27/502 (5%) Strand=Plus/Plus Query 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACTTTCACATATCACCCTTTTC 504 ||| || ||||| ||||||||||||||| ||||||| | ||||||||| |||| Sbjct 475 GTAGTCATTGTTTCCAATCTCTCTCCCC---TAACTAAAATAGCACATATCAAAGGTTTC 531 Query 505 TTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCAT 564 ||||| | ||||| | | |||||||| ||||||||| |||||||||| |||||||||||| Sbjct 532 TTCAATGGTGTTGCACAAGTTGTTAGCGTTCGACTTGTTGTAAACCACGAGGGTAAGCAT 591 Query 565 GTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAAT 624 ||||||||||| ||||||||||||||| ||||| || |||||| ||| |||||| | Sbjct 592 GTGGGCTATGGATTTGTTGAGTTTGCTTCTGCTTACGGAGCAAACAAGGCTCTGGAAGAG 651 Query 625 AAGAATGGTGAATACT-TGCACGATCATAAGATTTTCTTGATGCAAGGACTTGATGGAA- 682 || ||||||||||| | ||||| ||||||||||| | |||||| |||||| || ||| Sbjct 652 AAAAATGGTGAATA-TCTGCACAATCATAAGATTCTGTTGATGAAAGGAC---AT-GAAT 706 Query 683 CTCCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTCTTTGTTACCAATCTCT 742 |||| | || |||||||| || |||||||| || || || ||||||||| |||||||| Sbjct 707 CTCCTGGTTTTGCTGAGGAAGCTGCCATAA-CAA-AA-ACGCTCTTTGTTGCCAATCTC- 762 Query 743 C-TCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAAGATGTTGGACAAGTT 801 | | | | | | | |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 763 CGTGAC-T--CCATTCAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTT 819 Query 802 GTTCATGTTCGACTTATTGT--AGA-CCAAAGATGCAGGATGGTGGGTTTTGGCTTTGTT 858 |||||||||||||||||||| | | ||| || || || | ||| | || |||||| Sbjct 820 GTTCATGTTCGACTTATTGTAAACAGCCAGGGA--AAGCAT-GCGGGCTGGGGTTTTGTT 876 Query 859 GAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGAAAAGAAGAAGGGTGAATATTTG 918 ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| Sbjct 877 GAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAAC--GG-TGAATATTTG 933 Query 919 CACAATCGCGAGATTGCTCTTG 940 |||||| | ||||| |||||| Sbjct 934 CACAATTACAAGATTTCTCTTG 955 Score = 191 bits (103), Expect = 2e-47 Identities = 213/264 (81%), Gaps = 15/264 (6%) Strand=Plus/Plus Query 1133 TACCAAATATCATCAAGTTATTCAAAGTTGTTGGAGAAGTTGTTCGTGCTGGAGTTATTG 1192 |||||| ||||||||| || |||| | |||||||||| |||||| | | || |||||| Sbjct 1166 TACCAACTATCATCAATTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATTATTG 1225 Query 1193 TAGACCAC-TGGGGTGAGCATGTGGGCTGTTGCTTTGTTGAGTTTGCTTCTGCTGATGAA 1251 |||||||| | |||||||| |||||||||| ||||||| |||||| |||| | | ||| Sbjct 1226 TAGACCACAT-GGGTGAGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAACGAA 1284 Query 1252 GCAAAGAAGGCGGTGCAAGTGAGGAATGGTTATAAtttttttGTTAACGTGGCTGAGATA 1311 ||| |||||||| ||||| || || ||| ||| ||| |||| |||||||||||||| Sbjct 1285 GCAGAGAAGGCGCTGCAAAAGAAGACTGG---TAAGATTTCTGTTGACGTGGCTGAGATA 1341 Query 1312 GATCGTCCATACCCT-TTCCGACTCAATTACAAGC-TTGC-AGAGAAGCTTTGGTACGAA 1368 | | | |||||||| || ||| ||| ||||| | |||| | ||||||||||||||||| Sbjct 1342 G--C-TTCATACCCTGTT-GGACCCAAGTACAA-CGTTGCTA-AGAAGCTTTGGTACGAA 1395 Query 1369 GACAACCTTCGACGAG-AAGGCTT 1391 |||||||||||||||| || |||| Sbjct 1396 GACAACCTTCGACGAGGAATGCTT 1419 > AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 REVERSE LENGTH=895 Length=895 Score = 219 bits (118), Expect = 8e-56 Identities = 191/225 (85%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 668 AAGGACTTGATGGAACT-CCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTC 726 |||||||||||| |||| ||| ||| || |||||||||||| ||||||| ||||| ||| Sbjct 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTC 525 Query 727 TTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAA 786 |||||| || ||||||| || | | | |||||||| |||||||||||||||||||| Sbjct 526 TTTGTTTCCCGTCTCTCT-CC-GGA-AGCTCAAATATCAGATATCATCAATTTCTTCAAA 582 Query 787 GATGTTGGACAAGTTGTTCATGTTCGACTTATTGTAGACCAAA-GATGC-AGGATGGTGG 844 || |||||||||||||| ||||||||||||||||||||| | | | || || ||| ||| Sbjct 583 GACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGG-GCGAGCATG-TGG 640 Query 845 GTTTTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 889 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685 Score = 195 bits (105), Expect = 1e-48 Identities = 184/220 (84%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACT-TTCACATATCACCCTTTT 503 ||||||| |||||||||||||||||||| | ||||||| | || ||| ||| || Sbjct 138 GTACTCTATGTTGCCAATCTCTCTCCCC--A-AACTAAAATATT-GCATGTCAAAGAATT 193 Query 504 CTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCA 563 |||||||||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 194 CTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA--AG------CA 245 Query 564 TGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAA 623 ||||||||||||||||||||| |||||| || || || |||||||| ||||||| |||| Sbjct 246 TGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAA 305 Query 624 TAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTT 662 |||||||||||||| ||||| |||||| ||||||| ||| Sbjct 306 GAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTT 345 > AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein | chr3:18103152-18110216 FORWARD LENGTH=2766 Length=2766 Score = 202 bits (109), Expect = 8e-51 Identities = 147/165 (89%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 501 TTTCTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAA 560 ||||||||| ||||||||||| ||||||||||||||||||||||||| || ||| |||| Sbjct 2220 TTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGTAA 2279 Query 561 GCATGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAG-TGGGCGCTGG 619 ||||||||||||||||||||||||||||||| || || | |||||| ||| |||||| Sbjct 2280 GCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGG-CGCTGG 2338 Query 620 AAAATAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTTG 663 |||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 2339 AAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTG 2383 Score = 132 bits (71), Expect = 1e-29 Identities = 170/215 (79%), Gaps = 17/215 (8%) Strand=Plus/Plus Query 711 AAGAAATAAGACACTCTTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATAT 770 |||||| ||||| |||| |||| | |||| ||| | || || ||||| || |||| Sbjct 1803 AAGAAAAAAGACGCTCTATGTTTGCTGTCTCCCTCGC--GAC-ACTAAAATGCCAGATAT 1859 Query 771 CATCAATTTCTTCAAAGATGTTGGACAAGTTGTTCA-TGTTCGACTTATTGTAGACCAAA 829 |||| ||||||||||||||||||||||||||||| | ||||| ||||| | | | ||| Sbjct 1860 CATCGATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTACT--A--C-AAA 1913 Query 830 GATGCA--GGAT-G-GTGGGTTT--TGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAG 883 | ||| || | | || || |||||| ||||||||||||||||||||||||||| Sbjct 1914 -ACGCAACGGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAA 1972 Query 884 AGAAGGCGCTGGAAAAGAAGAAGGGTGAATATTTG 918 ||||||||||||| | |||||| |||||||||||| Sbjct 1973 AGAAGGCGCTGGATATGAAGAATGGTGAATATTTG 2007 > AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:3394009-3397526 FORWARD LENGTH=1272 Length=1272 Score = 150 bits (81), Expect = 3e-35 Identities = 190/238 (80%), Gaps = 26/238 (11%) Strand=Plus/Plus Query 1168 GAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT-T 1226 ||||||||||||| | || ||||||| ||||| | |||| ||||| |||||||| ||| | Sbjct 961 GAAGTTGTTCGTGTTCGACTTATTGTTGACCAATCGGGTAAGCATATGGGCTGTGGCTAT 1020 Query 1227 TGTTGAGTTTGCTTCTGCTGATGAAGCAAAGAAGGCGGT-G--CA-AGTG-A-GG---AA 1277 | ||||||||||||||||| |||||||| |||||||| | | || || | | || || Sbjct 1021 T-TTGAGTTTGCTTCTGCTAATGAAGCAGAGAAGGCGCTGGAACAGAG-GAATGGTAAAA 1078 Query 1278 ---TG-G-T-T-ATAAtttttttGTT-AACGTGGCTGAGATAGATCGTCCATACCCTTTC 1329 || | | | | || | ||| || | | |||||||||||| | |||||||||| || Sbjct 1079 GTTTGCGCTATCACAAAATCTTTCTTGAGC-TGGCTGAGATAG--C-TCCATACCCTCTC 1134 Query 1330 CGACTCAAT-TACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCGACGAGAA 1386 | || | || |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1135 CAACAC-ATGTACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCTACGAGAA 1191 Score = 122 bits (66), Expect = 7e-27 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 853 TTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGAAAAGAAGAAGGGTGAA 912 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 679 TTTGTTGAGTTTGCTTCTGCTAAGGAAGCAGAGAATGCGCTGGAAAAGAAGAAGGGTGAA 738 Query 913 TATTTGCACAATCGCGAGATT 933 |||||||| || |||||||| Sbjct 739 TATTTGCAGGATGGCGAGATT 759 > AT1G62810.1 | Symbols: | Copper amine oxidase family protein | chr1:23257726-23261966 REVERSE LENGTH=2860 Length=2860 Score = 91.6 bits (49), Expect = 2e-17 Identities = 170/223 (76%), Gaps = 30/223 (13%) Strand=Plus/Plus Query 1166 GAGAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT 1225 ||||||||||||||| | ||||||||||||| | | ||||| ||||||||||| Sbjct 2506 GAGAAGTTGTTCGTGTTCGAGTTATTGTAGAGC-C-------AGCATACGGGCTGTTGCT 2557 Query 1226 TTGTTGAGTTTGCTTCTGCTGAT-GAAGCAAAGAAGGCGGTGCAAGTGAGGAATGGTTAT 1284 ||||||||||||||||| || | |||||| |||||||| || || || ||| ||| | Sbjct 2558 TTGTTGAGTTTGCTTCT-CTTAACGAAGCAGAGAAGGCGTTGGAAACGAAGAAGGGTGA- 2615 Query 1285 AA-ttttt----t--t--G-TTA------ACGTGGCTGAGATAGATCGTCCATACCCTTT 1328 || ||||| | | | ||| ||||||||||||| | | |||| ||||||| Sbjct 2616 AACTTTTTACAGTCGTAAGATTATTCTTGACGTGGCTGAGATGG--C-TCCAGACCCTTT 2672 Query 1329 CCGACTCAATTACAAGCTTGCAGAGAAGCTTTGGTACGAAGAC 1371 ||||||||| ||||| |||| | |||||||||| ||| ||||| Sbjct 2673 CCGACTCAAGTACAACCTTGTAAAGAAGCTTTGTTACCAAGAC 2715 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71134172265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5