BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906988
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 ... 632 0.0
AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 551 2e-156
> AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28
| chr1:23833563-23835536 FORWARD LENGTH=1019
Length=1019
Score = 632 bits (342), Expect = 0.0
Identities = 364/375 (97%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 71 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCCGATAGTC 130
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 327 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCTGATAGTC 386
Query 131 CTTATTCAGGCGGAGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCGTTCAAAC 190
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 387 CTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCTTTCAAAC 446
Query 191 CACCAAAGGTTGCATTTAGGACAAAAGTGTTTCACCCTAATGTCAACAGCAATGGAAGCA 250
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 447 CACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAACAGCAATGGAAGCA 506
Query 251 TTTGCCTCGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCTAAGGTGTTGC 310
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 507 TTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCGAAGGTTTTGC 566
Query 311 TTTCGATATGTTCATTGTTAACAGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 370
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 567 TTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 626
Query 371 CTCACATGTACAAAACCGATAGAGCTAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 430
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 627 CTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 686
Query 431 AGTATGCAATGGGAT 445
| |||||||||||||
Sbjct 687 AATATGCAATGGGAT 701
Score = 119 bits (64), Expect = 3e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTTCAGAAGGATCCTCCAACTTCC 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCAACTTCC 190
Query 61 TGCAGTGCTG 70
||||||||||
Sbjct 191 TGCAGTGCTG 200
> AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme
8 | chr5:16675842-16677509 FORWARD LENGTH=803
Length=803
Score = 551 bits (298), Expect = 2e-156
Identities = 401/451 (89%), Gaps = 5/451 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTTCAGAAGGATCCTCCAACTTCC 60
||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| |||
Sbjct 68 ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCC 127
Query 61 TGCA---GTGCTGGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 117
|||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 128 TGCATTTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGT 187
Query 118 CCATCC-GATAGTCCTTATTCAGGCGGAGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 176
|| | | || ||||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 188 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGA 246
Query 177 TTATCCGTTCAAACCACCAAAGGTTGCATTTAGGACAAAAGTGTTTCACCCTAATGTCAA 236
||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 247 CTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 306
Query 237 CAGCAATGGAAGCATTTGCCTCGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 296
|||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 307 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCAT 366
Query 297 ATCTAAGGTGTTGCTTTCGATATGTTCATTGTTAACAGACCCAAACCCAGATGATCCATT 356
|| ||||||||||| ||||||||||| |||||||||| ||||| |||||||| || ||
Sbjct 367 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTT 426
Query 357 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCTAAGTATGAGTCTACTGCGAG 416
||| ||||||||||| ||||||||||||||||| ||||| || || ||| ||||||| ||
Sbjct 427 GGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAG 486
Query 417 AAGCTGGACTCAGAAGTATGCAATGGGATAA 447
|| |||||||||||||||||| ||||| |||
Sbjct 487 AAACTGGACTCAGAAGTATGCCATGGGCTAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21263257827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5