BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907410 Length=2112 Score E Sequences producing significant alignments: (Bits) Value AT1G60560.1 | Symbols: | SWIM zinc finger family protein | chr... 3397 0.0 > AT1G60560.1 | Symbols: | SWIM zinc finger family protein | chr1:22308572-22311350 REVERSE LENGTH=2404 Length=2404 Score = 3397 bits (1839), Expect = 0.0 Identities = 2025/2116 (96%), Gaps = 8/2116 (0%) Strand=Plus/Plus Query 1 ATGGAAATAGTCGAATCTA-TAGAAGAGATTCCAGTGCAAAACCCACAAATAGAAGATTT 59 ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| || Sbjct 74 ATGGAAATAGTCGAATC-ATTAGAAGAGATTCCAGTGCAAAACCCACAAGTAGAAGACTT 132 Query 60 TTCATGGGCTGACTTAACCTGGACCAAATTCGGAACATCGGAGCATCACGACGAAGTAGC 119 |||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 133 TTCATGGGCTGATTTGACCTGGACCAAATTCGGAACATCAGAGCATCACGACCAAGTAGC 192 Query 120 ACTGA-TTCCATATGCAAGAGTCGACGAATTCATAATCGGAGAATGCTCAAACGCAGAGT 178 | | | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 193 A-TTAGTTCCATACGCAAGAGTCGACGAATTCATCATCGGAGAATGCTCAAACGCAGAGT 251 Query 179 GCCCTACACGATTTCACATCGAAAGAGGAAGAAAACGTTCTCGAGGCAGCCTCAAAGAGT 238 ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 252 GCCCTACACGATTCCACATCGAAAGAGGAAGAAAACGCTCTCGAGGCAGTCTCAAAGAGT 311 Query 239 ACAAGAGCGATGAGTATTTGGAATATAGACTGTATTGGTGTTCTTTTGGTCCTGAGAACT 298 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 312 ACAAGAGCGACGAGTATTTGGAATATAGACTGTATTGGTGTTCATTTGGTCCTGAGAACT 371 Query 299 ATGGAGAAGGTGGTGGTGTGTTGCCCAGTAGAAAATATCGTCTCAACACTAGAAATCGAG 358 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 372 ATGGAGAAGGTGGTGGTGTGTTACCCAGTAGGAAATATCGTCTCAACACTAGAAATCGAG 431 Query 359 CTGCGAGACCTCAATCTATGAGAGGATGTACTTGTCATTTTGTGGTGAAACGACTCTATG 418 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 432 CTGCGAGACCTCAATCTATGAGAGGATGTACATGTCATTTTGTGGTTAAACGACTCTATG 491 Query 419 CTCGTCCTTCACTTGCGCTTCTTATATACAATGAGAGACGACATGTGAACAAAGCTGGGT 478 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 492 CTCGTCCTTCACTTGCGCTTCTTATATACAATGAGAGACGACATGTCAACAAAGCTGGGT 551 Query 479 TTGTTTGTCATGGACCTCTTGATAGAGATGCTATTGGTCCTGGTGCTAAGAAGATTCCTT 538 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 552 TCGTTTGTCATGGACCTCTTGATAGAGATGCGATTGGTCCTGGTGCTAAGAAGATTCCTT 611 Query 539 ATATATGTAATGAGATTCAGCAGCAAACTATGTCTATGATCTATCTTGGGATTCCTGAAG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 ATATATGTAATGAGATTCAGCAGCAAACTATGTCTATGATCTATCTTGGGATTCCTGAAG 671 Query 599 AAAACGTTTTGGAGAAACATATTGAAGGGATTCAGAGGTATTGTGGTTCTGATGCAACTG 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AAAACGTTTTGGAGAAACATATTGAAGGGATTCAGAGGTATTGTGGTTCTGATGCAACTG 731 Query 659 TTGATAGTCTTGCCTCTCAGTATGTTCATAAACTTGGGATGATTATCAAACGTTCCACTC 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 TTGATAGTCTTGCCTCTCAGTATGTTCATAAACTTGGGATGATTATCAAACGTTCCACTC 791 Query 719 ATGAGCTGGATTTAGATGATCAAGCTAGTATCAAGATATGGGCTGAGCGCAACAAGAAAT 778 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 792 ATGAGCTGGATTTAGATGATCAAGCTAGTATCAAGATTTGGGCTGAGCGCAACAAGAAAT 851 Query 779 CAATCTTCTTTTATCAGGAATCTTCGGAAACGGATCAGTTCATGCTCGGGATTCAAACGG 838 | |||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||| Sbjct 852 CCATCTTCTTTTATCAGGAATCTTCGGAGACGGATCAGTTTATGTTGGGGATTCAAACGG 911 Query 839 AGTGGCAGTTGCAGCAGCTTGTGCGTTTTGGGCATTGTAGTCTTATTGCAGCTGATTTGA 898 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 912 AGTGGCAGTTGCAGCAGCTTGTGCGTTTTGGGCATTGTAGTCTTGTTGCAGCTGATTCGA 971 Query 899 CATTTGGGATAAAGAGACTTAAGTATCCTCTGTGCACGCTTCTTGTATTTGATTCAAGAC 958 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 972 CTTTTGGGATAAAAAGACTTAAGTATCCTCTGTGCACGCTTCTTGTATTTGATTCAAGAC 1031 Query 959 ATCATGCTCTCCCTGTCGCTTGGATTATCTCGCGTAGCTATTTGAAATCTGATGTT-ACG 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1032 ATCATGCTCTCCCTGTCGCTTGGATTATCTCGCGTAGCTATTTGAAATCTGATGTTGA-G 1090 Query 1018 AAGTGGATGAAAATACTACTCCAACGCGCCCAGAGTGTTGATCCTGGTTTCAAAATCAAT 1077 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1091 AAGTGGATGAAAATACTACTCCAACGCGCCCAGAGTGTTGAGCCTGGTTTCAAAATCAAT 1150 Query 1078 GGCTTTATCATTGACGATGCTGCAACAGAGATTGATCCCATAAGGGACACATTTTGTTGC 1137 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1151 GGCTTTATCATTGACGATGCTGCAACGGAGACTGATCCCATAAGGGACACATTTTGTTGC 1210 Query 1138 CCCATCCTTTTCTCTCTCTGGCGTGTTCGTAGATCCTGGCTTCGGAATGTTGTGAAGAAG 1197 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1211 CCCATCCTTTTCTCTCTCTGGCGTGTTCGTAGATCATGGCTTCGAAATGTTGTGAAGAAG 1270 Query 1198 TGCGATAGCATTGAGGTTCAAAGAGATTTATTCAAATGTTTAGGAGAACTCGTGTACAGT 1257 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1271 TGCGATAGCATTGAGGTTCAAAGAGATTTATTCAAATGTCTAGGAGAACTCGTGTACAGT 1330 Query 1258 ATTTGGGATGGAGTAGATACAACAAAGGCTTTAGAAAGGTTAACTCAGGATTTTGTTGAT 1317 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1331 ATTTGGGATGGAGTAGATACAACAAAGGCTTTAGAAAAGTTAACGCAGGATTTTGTTGAT 1390 Query 1318 CAAACCGCGTTCATGCAGTATTTCACATCCACTTGGTTGCCTAAAATAGGAATGTGGCTC 1377 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1391 CAAACCGCGTTCATGCAGTATTTCACATCCACTTGGTTGCCTAAAATAGGAATGTGGCTT 1450 Query 1378 TCAACTATGAAAAGTTTTCCTCTTGCAAGCCAAGAAGCATGTGGTGCGATAGAAGCTTAC 1437 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1451 TCAACTATGAAAAGTCTTCCGCTTGCAAGCCAAGAAGCATGTGGTGCGATAGAAGCTTAC 1510 Query 1438 CATATAAAGCTTAAAGTAAAATTGTTTGACGATACACACCTCGGTGCCCTTCAGAGAGTA 1497 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1511 CATATAAAGCTGAAAGTAAAATTGTTTGACGATACACACCTCGGTGCCCTTCAGAGAGTA 1570 Query 1498 GATTGGTTGGTACACAAGCTGACGACGGAACTCCATTCGAGTTATTGGCTTGATCGGTAT 1557 |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1571 GATTGGTTGGTACACAAGCTGACGACTGAACTTCATTCTAGTTATTGGCTTGATCGGTAT 1630 Query 1558 GCTGATGAAAGTGATTCTTTCCAAAATGTTAAAGAAGAATACATTGCTTCTACTTCCTGG 1617 ||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||| Sbjct 1631 GCTGATGAAAGTGATTCTTTCCAGAATGTTAAAGAAGAATACATTGCTTCAACATCATGG 1690 Query 1618 CACAGGGCG-TCAGAGATTCCAGAATCCGCTGTTACACTAGACGAAAGTAACCTCCTTGT 1676 || | ||| | |||||||| || || ||||||||||||||||||| || ||||| | Sbjct 1691 TACCGAGCGATG-GAGATTCCTGACTCTGCTGTTACACTAGACGAAAACAATATCCTTCT 1749 Query 1677 TGCAAAGGTTCAGTCTCAGAGAGATAGCGATGTAACACGAGTTGTGTGGAACCCAGGTTC 1736 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1750 AGCGAAGGTTCAGTCTCAGAGAGATAGCGATGTAACACGAGTCGTGTGGAACCCAGGTTC 1809 Query 1737 GGAGTTTGCCTTCTGTGATTGTGCTTGGTCTTTGCAAGGAAATTTATGCAAACACATCAT 1796 ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1810 GGAGTTTGCTTTCTGTGATTGCACTTGGTCTTTGCAAGGAAATCTATGCAAACACATCAT 1869 Query 1797 AAAGGTAAATACAATGTGTGAAAACCGCCAAGGATATGGTGACTCAATGTCCTTGCGTTC 1856 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1870 AAAGGTAAATACAATGTGTGAAAACCGCGAAGGATATGGTGACTCAATGTCCTTGCGTTC 1929 Query 1857 GTTCAAAGAGAAACTGAGAAACATAAAGATGAAACCTATGGATGACTCGATAGCCCTGGA 1916 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1930 CTTCAAAGAGAAACTGAGAAACATTAAGATGAAACCTATGGATGACTCGATAGCTTTGGA 1989 Query 1917 TCTGTCAATGGCACTGACGCTGCAGATGTTTGATCAGATAAAGCAATTGGTGCAATTAAG 1976 |||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1990 TCTGTCGATGGCATTGACGCTGCAGATGTTTGATCAGATAAAGCAGTTGGTGCGATTAAG 2049 Query 1977 CGGAACAAATGATATCAGCAATATAGTCAATGATTTGCCAGTGAAATGGGGTTGTAAGAA 2036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2050 CGGAACAAATGATATCAGCAATATAGTCAATGATTTGCCAGTGAAATGGGGTTGTAAGAA 2109 Query 2037 AGGCCGAACAACCATAGGCATTCCTGCATCCATAGCTGCCTTTACAAAGAAAAGGAGTCA 2096 |||||||||||||||||||||||||||||| || |||||||||||||||||||| || || Sbjct 2110 AGGCCGAACAACCATAGGCATTCCTGCATCTATTGCTGCCTTTACAAAGAAAAGAAGCCA 2169 Query 2097 GAAACGAAAGCGATAA 2112 |||| ||||||||||| Sbjct 2170 GAAAAGAAAGCGATAA 2185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104718336870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5