BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907425

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA syn...   219    1e-56
  AT1G49930.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   122    9e-28


> AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, 
class IIc | chr5:7616073-7619981 REVERSE LENGTH=3105
Length=3105

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 128/133 (96%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  84    GCTATGTGGCGGAGGAGGTGGTGGAAAACCCAGTTTTGCTCAGGCAGGCGGCAGAAAGCC  143
             ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct  2825  GCTGTGTGGCGGAGGAGGTGGTGGAAAGCCCAATTTTGCTCAGGCAGGCGGCAGAAAGCC  2884

Query  144   TGGAAATCTCCCAAGTGCCTTAGCGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA  203
             || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  2885  TGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA  2944

Query  204   AAAGCTAGGGTGA  216
             |||||||||||||
Sbjct  2945  AAAGCTAGGGTGA  2957


> AT1G49930.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1); 
Has 21 Blast hits to 21 proteins in 10 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18484932-18485639 
FORWARD LENGTH=405
Length=405

 Score =  122 bits (66),  Expect = 9e-28
 Identities = 76/81 (94%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  136  AGAAAGCCTGGAAATCTCCCAAGTGCCTTAGCGAAAGCTCGGGAAGATCTCGTGGCAACT  195
            |||||||| | ||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct  134  AGAAAGCCCGAAAATCTCTCAAGTGCCTTAGAGAAAGCTCAGGAAGATCTCGTGGCAACT  193

Query  196  CTATCCGAAAAGCTAGGGTGA  216
            |||||||||||||||||||||
Sbjct  194  CTATCCGAAAAGCTAGGGTGA  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5