BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907425 Length=216 Score E Sequences producing significant alignments: (Bits) Value AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA syn... 219 1e-56 AT1G49930.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 122 9e-28 > AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616073-7619981 REVERSE LENGTH=3105 Length=3105 Score = 219 bits (118), Expect = 1e-56 Identities = 128/133 (96%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 84 GCTATGTGGCGGAGGAGGTGGTGGAAAACCCAGTTTTGCTCAGGCAGGCGGCAGAAAGCC 143 ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 2825 GCTGTGTGGCGGAGGAGGTGGTGGAAAGCCCAATTTTGCTCAGGCAGGCGGCAGAAAGCC 2884 Query 144 TGGAAATCTCCCAAGTGCCTTAGCGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA 203 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2885 TGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA 2944 Query 204 AAAGCTAGGGTGA 216 ||||||||||||| Sbjct 2945 AAAGCTAGGGTGA 2957 > AT1G49930.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1); Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18484932-18485639 FORWARD LENGTH=405 Length=405 Score = 122 bits (66), Expect = 9e-28 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 136 AGAAAGCCTGGAAATCTCCCAAGTGCCTTAGCGAAAGCTCGGGAAGATCTCGTGGCAACT 195 |||||||| | ||||||| |||||||||||| |||||||| ||||||||||||||||||| Sbjct 134 AGAAAGCCCGAAAATCTCTCAAGTGCCTTAGAGAAAGCTCAGGAAGATCTCGTGGCAACT 193 Query 196 CTATCCGAAAAGCTAGGGTGA 216 ||||||||||||||||||||| Sbjct 194 CTATCCGAAAAGCTAGGGTGA 214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9651407808 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5