BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907487
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59850.1 | Symbols: | ARM repeat superfamily protein | chr1... 2013 0.0
> AT1G59850.1 | Symbols: | ARM repeat superfamily protein | chr1:22028509-22030207
REVERSE LENGTH=1497
Length=1497
Score = 2013 bits (1090), Expect = 0.0
Identities = 1369/1504 (91%), Gaps = 17/1504 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCATTCTTCACAGCCGGCGCCGATGACG 60
||||||||||||||||||||||||||||||||||| ||||||||| | | | ||||||
Sbjct 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCA---TTCACAGCC-G-G-CTATGACG 54
Query 61 GTTACTGATCTCAAGCAACGAGTCATCGCCTGTCTCAATCGTCTCTCTGATCGTGACACT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 55 GTTACTGATCTCAAGCAACGAGTCATCGCTTGTCTCAATCGTCTCTCTGATCGCGATACT 114
Query 121 -TTATCTCTCGCCGCCGCAGAGCTTGATTCAATTGCTCTTAATCTCTCACCGGAGAATTT 179
|| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 115 CTT-GCTCTCGCTGCCGCAGAGCTTGATTCAATCGCTCTTAATCTCTCACCGGAGACTTT 173
Query 180 CTCTCTGTTTATAAACTGTCTTCAGAGTACAGACTCTTCCGCGAAATCTCCGGTGAGAAA 239
|||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 174 CTCTTTATTTATTAACTGTCTTCAGAGTACAGACTCTTCCGCAAAATCTCCGGTGAGGAA 233
Query 240 ACATTGCGTTTCGCTTGTCTCTGTTCTTTCTCGTTCTCACGGTGATTCTCTCGCTCCTCA 299
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 234 ACATTGCGTTTCGCTTCTCTCTGTTCTTTCTCGTTCTCATGGCGATTCTCTCGCTCCTCA 293
Query 300 CCTCTCAAAAATGGTCTCCACTGTCCTCCGCCGCCTCCGTGATCCCGACTCCTCCGTCCG 359
|||||| || ||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 294 CCTCTCGAAGATGGTCTCCACCGTTCTCCGCCGCCTCCGTGATCCTGATTCCTCCGTCCG 353
Query 360 CGCTGCTTGTGCTGCTGCTTCCGTAGATATGACTACCAACATCACCGGACAGCCATTCTC 419
|| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 354 TGCCGCTTGTGTTGCCGCTTCCGTTGATATGACTACCAACATCACCGGACAGCCTTTCTC 413
Query 420 CATCCTCTTGGGGCCGATGATTGAAGCACTTATCCACGACTGCGATCCCAATGCACAGAT 479
|||||| || || || ||||| ||| | |||||||||| |||||||||||||| |||||
Sbjct 414 CATCCTTTTCGGACCAATGATCGAAACGGTTATCCACGATTGCGATCCCAATGCGCAGAT 473
Query 480 TGGCGCTGCCGTGTGCCTTGCGGCTGCAGTAGATGCCGCCGATGAGCTGGATGTTGAGCA 539
||||||| |||||||||| || || ||||| || || ||||||| ||||||||||||
Sbjct 474 CAGCGCTGCTATGTGCCTTGCTGCGGCGGTAGACGCAGCAGATGAGCCGGATGTTGAGCA 533
Query 540 ACTGCAGAAGGCACTTCCTAAAATCGGGAAATTGCTAAAATCTGATGGTTTCAAGGCGAA 599
|||||||||||| || || || || ||||| ||||| ||||| || ||||||||||||||
Sbjct 534 ACTGCAGAAGGCCCTGCCGAAGATTGGGAAGTTGCTTAAATCGGAAGGTTTCAAGGCGAA 593
Query 600 AGCGGAACTTCTTGGAGCCATAGGGAGCGTAATTGGCACTGTTGGCGGCCGAAACAGCGA 659
|||||||||||||||||||||||| | |||||| ||| |||||||||| |||||||||||
Sbjct 594 AGCGGAACTTCTTGGAGCCATAGGAACCGTAATCGGCGCTGTTGGCGGTCGAAACAGCGA 653
Query 660 AAAGGCGGTGCTAGATTGGCTTTTACCAAACGTCTCAGAGTTTCTTAGCAGCGATGATTG 719
||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 654 AAAGGCGGTGCTAGACTGGCTTTTACCAAACGTCTCGGAGTTTCTAAGCAGCGACGATTG 713
Query 720 GCGTGCGAGAAAAGCTGCCGCAGAGGCGATGGCTAGAGTGGCTTTGGCGGAAGAAGAACT 779
||||||||| |||||||| || ||||| ||||||||||||||| ||| ||||||||| |
Sbjct 714 GCGTGCGAGGAAAGCTGCTGCGGAGGCAATGGCTAGAGTGGCTATGGTAGAAGAAGAATT 773
Query 780 AGCTCCTTTGTATAAGAAGACATGTGTAGCTATTCTTGAGAGCAGAAAATTTGATAAGGT 839
|||||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||||
Sbjct 774 AGCTCCACTGTATAAGAAGACATGTCTAGGTATTCTTGAGAGCAGACGATTCGATAAGGT 833
Query 840 CAAACTTGTTAGAGAGACGATGACTCGTACATTGAGTTTATGGAAGCAACTTGAAGGTGA 899
|||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct 834 CAAACTTGTTAGAGAGACAATGAATCGTACATTGGGTTTATGGAAGCAACTTGAAGGTGA 893
Query 900 TTCAACAGAGGTCTCAGAGTCATCTTCCTCCTCCAAAACAGCTTCTTCTGGTTTCTCTGC 959
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 894 TTCAACAGAGGTCTCAGAGTCTTCTTCCTCCTCCAAATCAGCTTCTTCTGGTTTGTCTGC 953
Query 960 GACTTCAGGAAAGAGAAGCAATACATTGAGAGGCAAAGATAGGAATTTAAACGCACCACT 1019
||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
Sbjct 954 GACTTCAGGAAAGAGAAGCAACACATTGAAAGGCAAAGATAGGAATTTAAACACACCATT 1013
Query 1020 AAGCTCAAAGTCAAATGATGTTGAGCCTTTAGATCGTGGTGACACTCCTAAGGATGTGGA 1079
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1014 AAGCTCAAAGTCGAATGATGTTGAGCCATTAGATCGTGGTGACACTCCTAAGGATGTTGA 1073
Query 1080 GCAGGAAGCTGTCGTATCGAAAGAGAAGCGGAAAA---C-AC-T-GGAAGCTAAACGGGC 1133
|||||||||||| || ||||||||||||||||| | || | || |||||||||||
Sbjct 1074 GCAGGAAGCTGTTGTGTCGAAAGAGAAGCGGAATCGTTCGACATTGGGAGCTAAACGGGT 1133
Query 1134 TCTGTTTCCGGCAAAGACGTATAAGGTCAAAGAGAATGCGTCGAACAAGTCACAAGTTGT 1193
|||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 1134 TCTGTTCCCGGCAAAGATGCATAAGGTCAAAGAGAATGGGTCGAACAAGTCACAAGTTGT 1193
Query 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGAAAGTGGTAGTAGCAGTTCT-C--AGGC 1250
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGACAGTGGTAGTAGCAGTTCTTCTCAGGC 1253
Query 1251 AAAGAATAATGCAGAAGAGTTGTCTCTGATAAGAAACCAGATCACTCAGATCGAAAAACA 1310
||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1254 AAAGAGTAATGCAGAAGAGTTGTCTCTGATAAGACACCAGATTACACAGATCGAAAAACA 1313
Query 1311 ACAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCAGAACGGTATGCA 1370
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1314 GCAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCATAACGGAATGCA 1373
Query 1371 ATCTCTGGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1430
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATCTCTAGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1433
Query 1431 GCTGGTCTCTCGCACCATAACACAAAATGGAAACCCCAAACGAAACGCCTGTCGACAGAA 1490
|| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1434 ACTAGTCTCTCGCAGCATAACACAAAATGGAAACCACAAACGAAACGCCTGTCGACAGAA 1493
Query 1491 CTGA 1494
||||
Sbjct 1494 CTGA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5