BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907518

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59700.1 | Symbols: ATGSTU16, GSTU16 | glutathione S-transfe...   584    3e-166


> AT1G59700.1 | Symbols: ATGSTU16, GSTU16 | glutathione S-transferase 
TAU 16 | chr1:21936296-21937959 FORWARD LENGTH=1064
Length=1064

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 356/376 (95%), Gaps = 0/376 (0%)
 Strand=Plus/Plus

Query  202  TGGTTTCCGGCTTTGAGAGTGGCTGCGATCACCAAATCAGAAGACACAAAAGCGAAAGCC  261
            ||||||||||| |||||| |||| |||||||| ||||| |||||| ||||||||||||||
Sbjct  491  TGGTTTCCGGCGTTGAGAATGGCGGCGATCACTAAATCGGAAGACGCAAAAGCGAAAGCC  550

Query  262  ATGGAAGAAGTGGAAGAAGGATTGTTGCAACTCGAGGATGCATTTGTTTCTATAAGCAAA  321
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  551  ATGGAAGAAGTGGAAGAAGGGTTGTTGCAACTCGAGGATGCGTTTGTTTCTATAAGCAAA  610

Query  322  GGGAAACCCTTTTTTGGCGGTGAAGCAATCGGGTTTATGGACATTTGCTTTGGAAGCTTG  381
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  611  GGGAAACCCTTTTTCGGCGGTGAAGCAATCGGGTTTATGGATATTTGCTTTGGAAGCTTT  670

Query  382  GTGGTTCTCTTGAAGGCTAGAGAGAAGTTTAAAGCAGAAAAGCTTTTAGACGAATCAAAA  441
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  671  GTGGTTCTCTTGAAAGCTAGAGAAAAGTTTAAAGCAGAAAAGCTTTTAGACGAATCAAAA  730

Query  442  ACTCCTTCTCTTTGTAAATGGGCCGACCGGTTCTTATCCGATGAAACAGTGAAGAATGTG  501
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  731  ACTCCTTCTCTTTGTAAATGGGCCGACCGGTTCTTGTCCGATGAAACGGTGAAGAATGTG  790

Query  502  GTGCCGGAGATCGATAAAGTAGCTGAGTTTCTGCAAGAACTTGAGGTTAGAGCTCAATCA  561
            |  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  791  GCACCGGAGATCGAAAAAGTAGCTGAGTTTCTACAAGAACTTGAGGTTAGAGCTCAATCC  850

Query  562  GCAGCTTCAAGATCTT  577
            ||||||||||||||||
Sbjct  851  GCAGCTTCAAGATCTT  866


 Score =  215 bits (116),  Expect = 4e-55
 Identities = 146/160 (91%), Gaps = 4/160 (3%)
 Strand=Plus/Plus

Query  1    ATGGGAGAGAGAGAGGAAGTGAAACTATTGGGAGTATGGTACAGTCCATACGCCATAAGA  60
            |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  164  ATGGGAGAGAAAGAGGAAGTGAAACTATTAGGAGTATGGTACAGTCCATACGCCATAAGA  223

Query  61   CCAAAGATCGCTCTTCGTCTCAAATCAATCGATTATGATTACGTTGAAGAAGATTTGTTT  120
            || |||||||||||||||||||||||| | ||||||||||||||||| ||| || |||||
Sbjct  224  CCTAAGATCGCTCTTCGTCTCAAATCAGTGGATTATGATTACGTTGAGGAAAATCTGTTT  283

Query  121  GGATCAAAGAGTGAGCTAGCTTCTTCTCAAATCGAACCCG  160
            ||||| |||||||||||   | ||||||||||| ||||||
Sbjct  284  GGATCCAAGAGTGAGCT---T-CTTCTCAAATCAAACCCG  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5