BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907815

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27630.1 | Symbols: ACBP5 | acyl-CoA binding protein 5 | chr...   217    1e-55
  AT2G45900.1 | Symbols:  | Phosphatidylinositol N-acetyglucosami...   193    2e-48


> AT5G27630.1 | Symbols: ACBP5 | acyl-CoA binding protein 5 | chr5:9776023-9781002 
FORWARD LENGTH=2247
Length=2247

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 140/151 (93%), Gaps = 2/151 (1%)
 Strand=Plus/Plus

Query  246   CAAAGTTCAAGGAAAAGCCGAACGCATTATCACAACCCTTAAATTCGAAAAAGAAGAA--  303
             ||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||  
Sbjct  1635  CAAGGTTGAAGGAAAAGCCGACCGCATTATCACAACCCTTAAATCCGAAAAAGAAGAAGT  1694

Query  304   GGAGACATCACTCAACAAGGAAAAGATACTAACTCTTCAACTAAAGGAAGAGTTAGCAGA  363
             |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  1695  GGAGGCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTAGCAGA  1754

Query  364   GATAGAGACACGAAATACAGAGTTGTACAAG  394
             |||||| ||||||||||||||||| ||||||
Sbjct  1755  GATAGACACACGAAATACAGAGTTATACAAG  1785


> AT2G45900.1 | Symbols:  | Phosphatidylinositol N-acetyglucosaminlytransferase 
subunit P-related | chr2:18886069-18888674 
REVERSE LENGTH=2163
Length=2163

 Score =  193 bits (104),  Expect = 2e-48
 Identities = 122/130 (94%), Gaps = 3/130 (2%)
 Strand=Plus/Plus

Query  1    ATGTTTGACTTCAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTGGA  60
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  70   ATGTTTGATTTTAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTCGA  129

Query  61   AGCAAAAG-A--ATCATAGGTAATAATGGAATGTTTGAGACTAAGGTTGAGAAGCAGCTT  117
            ||||| || |  |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  130  AGCAAGAGAATCATCATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGAGAAGCAGCTT  189

Query  118  ACTTGTGACT  127
            ||||||||||
Sbjct  190  ACTTGTGACT  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5