BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907853 Length=825 Score E Sequences producing significant alignments: (Bits) Value ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152... 1507 0.0 ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:843... 1507 0.0 > ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=825 Length=825 Score = 1507 bits (816), Expect = 0.0 Identities = 822/825 (99%), Gaps = 0/825 (0%) Strand=Plus/Plus Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120 Query 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 Query 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420 Query 421 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480 Query 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540 Query 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600 Query 601 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660 Query 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720 Query 721 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 780 Query 781 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825 > ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:84337-85843 REVERSE LENGTH=825 Length=825 Score = 1507 bits (816), Expect = 0.0 Identities = 822/825 (99%), Gaps = 0/825 (0%) Strand=Plus/Plus Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120 Query 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 Query 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420 Query 421 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480 Query 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540 Query 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600 Query 601 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660 Query 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720 Query 721 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 780 Query 781 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40187317600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5