BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907875 Length=1497 Score E Sequences producing significant alignments: (Bits) Value ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 2682 0.0 AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family prot... 124 2e-27 AT1G55100.1 | Symbols: | transposable element gene | chr1:2055... 124 2e-27 > ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=1497 Length=1497 Score = 2682 bits (1452), Expect = 0.0 Identities = 1482/1497 (99%), Gaps = 0/1497 (0%) Strand=Plus/Plus Query 1 ATGAGAACAAATCCTACTACTTCGGATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTG 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGAACAAATCCTACTACTTCAAATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTG 60 Query 61 GGACGTATCGCTCAAATCATTGGTCCGGTACTGGATGTAGCCTTTCCCCCGGGCAAAATG 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GGACGTATCGCCCAAATCATTGGTCCGGTACTGGATGTAGCCTTCCCCCCGGGCAAAATG 120 Query 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180 Query 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240 Query 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300 Query 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360 Query 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420 Query 421 CAATTAGATACAAAATTATCAATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAATTAGATACAAAATTATCGATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480 Query 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540 Query 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600 Query 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660 Query 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTCTATGGTCAGATGAAT 720 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTTTATGGTCAGATGAAT 720 Query 721 GAACCACCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAACCGCCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780 Query 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840 Query 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900 Query 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACAAAAAAGGGGTCC 960 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACGAAAAAGGGGTCC 960 Query 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCTCCTGCC 1020 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCACCTGCC 1020 Query 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080 Query 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140 Query 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAGCAAACTTTACAACGTTACAAGGAG 1200 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAACAAACTTTACAACGTTACAAGGAG 1200 Query 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACC 1260 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACC 1260 Query 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320 Query 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAAATTG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAATTTG 1380 Query 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCTGAACAGGCCTTTTACTTAGTGGGTAACATC 1440 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCCGAACAGGCCTTTTACTTAGTGGGTAACATC 1440 Query 1441 GATGAAGCTACTGCGAAGGCTACAAACTTAGAAATGGAGAGTAAATTGAAGAAATGA 1497 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1441 GATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGTAAATTGAAGAAATGA 1497 > AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family protein | chr1:20554352-20558529 FORWARD LENGTH=2762 Length=2762 Score = 124 bits (67), Expect = 2e-27 Identities = 111/130 (85%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 797 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 854 ||||||||||||| | | || ||||||||||||||||||||||||||||||||||| | Sbjct 2588 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 2531 Query 855 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 914 | ||||||| ||||||||| || ||||||||||||||||||||||||||| || Sbjct 2530 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 2479 Query 915 AATGGGTACT 924 |||||||||| Sbjct 2478 AATGGGTACT 2469 > AT1G55100.1 | Symbols: | transposable element gene | chr1:20558235-20559103 REVERSE LENGTH=869 Length=869 Score = 124 bits (67), Expect = 2e-27 Identities = 111/130 (85%), Gaps = 12/130 (9%) Strand=Plus/Plus Query 797 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 854 ||||||||||||| | | || ||||||||||||||||||||||||||||||||||| | Sbjct 749 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 806 Query 855 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 914 | ||||||| ||||||||| || ||||||||||||||||||||||||||| || Sbjct 807 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 858 Query 915 AATGGGTACT 924 |||||||||| Sbjct 859 AATGGGTACT 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73845001695 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5