BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908250
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67070.1 | Symbols: DIN9, PMI2 | Mannose-6-phosphate isomera... 1969 0.0
> AT1G67070.1 | Symbols: DIN9, PMI2 | Mannose-6-phosphate isomerase,
type I | chr1:25042135-25044647 FORWARD LENGTH=1750
Length=1750
Score = 1969 bits (1066), Expect = 0.0
Identities = 1239/1324 (94%), Gaps = 5/1324 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCAGACGCAATCCAAACGAACGGTCACGATCAAACCAAGTTAACCGGCGGTGAA 60
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 190 ATGGGAGCAGACGCAATCCAAACGAATGGTCACGATCAAGCCAAGTTAACCGGCGGTGAA 249
Query 61 GAGATCCAACGGCTGAGATGTTTCGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAC 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 250 GAGATCCAACGGCTGAGATGTTTTGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAG 309
Query 121 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGACCCGGAGATTCCT 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 310 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGATTCGGAGATTCCT 369
Query 181 CACGCCGAGTTTTGGATGGGGACTCATGAGTCAGGACCGAGTCATGTTGAATTTGGGTCG 240
|||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 370 TACGCTGAGTTTTGGATGGGTACTCATGAGTCTGGACCGAGTCATGTTGAATTCGGGTC- 428
Query 241 TTGGGTCATGGTGGGTCTGATAAGTGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 300
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 429 --GGGTCATGGTGTGTCTGATAAATGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 486
Query 301 CCGGATTTACTCGGGTCTAAAGTCGTGGACAAGTGGGGTTGTGATCTTCCTTTTCTCTTC 360
||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 487 CCGAATTTACTCGGGTCTAAAGTCGTGGACAAATGGGGTTGTGATCTTCCTTTCCTTTTC 546
Query 361 AAGGTGTTGTCAGTGACAAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCTTTAGCA 420
||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 AAGGTTTTGTCAGTAACGAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCCTTAGCA 606
Query 421 GAGAAATTGCATAGAGAAGATCCTCTTCTCTATAGAGATAATAACCACAAGCCTGAGATT 480
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 607 GAGAAATTGCATAGAGAAGATCCTCTTCTTTACAGAGACAATAACCACAAGCCTGAGATT 666
Query 481 GCTCTTGCTGTTACTCCTTTTGAAGCCCTTTGTGGTTTCGTACCTCTCAAGGAACTGAAG 540
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 667 GCTCTTGCTGTTACTCCTTTTCAAGCCCTTTGTGGTTTCGTAACTCTTAAGGAACTGAAG 726
Query 541 GAGGTTATCACCAATGTACCAGAGATCACAGAGCTTGTGGGAAGCAAAGCTGCAGATCAA 600
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 727 GAGGTTATCACTAATGTACCAGAGATCACGGAGCTTGTAGGAAGCAAAGCTGCAGATCAA 786
Query 601 ATCTTCAACGTCCACGAACACGATGAAGATGAGAGAGTCAAATCCGTTGTCCGGTTGATC 660
||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||
Sbjct 787 ATCTTCAACGTCCACGAACACGATGAAGACGAGAGAATCAAATCCGTTGTTCGATTGATC 846
Query 661 TTCACGCAGTTGATGTCCGCAAGCAACAATGAGACGAAGCAAGGGGTATCTCGGATGAAG 720
||||| ||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 847 TTCACACAGTTGATGTCTGCAAGTAACAATGAGACGAAGCAAGTGGTTTCTCGGATGAAG 906
Query 721 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 966
Query 781 GAACTGGAGAAACAGTACTCAGGTGACATAGGTGTGATCTCAGCCTTCTTCTTTAACTAC 840
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 967 GAACTGGAGAAACAGTACACTGGTGACATAGGTGTCATCTCAGCCTTCTTCTTTAACTAT 1026
Query 841 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCAAACGAGCCACATGCTTACATC 900
|||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 1027 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCTAACGAGCCACACGCATATATA 1086
Query 901 TCCGGCGACTGTATCGAGTGTATGGCGGCTTCAGACAACGTTGTTAGAGCTGGCCTTACT 960
||||| || ||| | |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1087 TCCGGTGATTGTGTTGAGTGTATGGCGGCTTCAGACAACGTAGTTAGAGCTGGTCTTACT 1146
Query 961 CCTAAACACCGCGATGTTCAAACCCTTTGCTCTATGCTTACCTACAAATTGGGCTACCCG 1020
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1147 CCTAAACATCGCGATGTTCAAACGCTTTGCTCTATGCTTACCTACAAATTGGGTTACCCG 1206
Query 1021 GAGATTCTGAAAGGATTTCCTCTAACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1207 GAGATTCTGAAAGGATTTCCTCTGACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1266
Query 1081 GAGTTCGAAGTGGACCATTGCGATCTACCTGGTGGAAATTCGACGGTTTTTCCGGCAGTA 1140
||||| |||||||| ||||| ||||| ||| | ||||| |||||||||||||||||||||
Sbjct 1267 GAGTTTGAAGTGGATCATTGTGATCTTCCTAGAGGAAAATCGACGGTTTTTCCGGCAGTA 1326
Query 1141 CCGGGGCCTTCGGTTTATCTGGTTATTGAAGGTCAAGGGAAATTGCAAACCGGTTCATCT 1200
|| || |||||||||||| ||||||||||||| ||||| |||||| |||||||||||||
Sbjct 1327 CCAGGTCCTTCGGTTTATTTGGTTATTGAAGGAAAAGGGCAATTGCGAACCGGTTCATCT 1386
Query 1201 CAA-TTGTTGGTGAACCGAGGAGATGTTTTGTTTGTTCCGGCTCATAACGAGGTTCACGT 1259
|| || ||||| |||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 1387 AAAGTT-TTGGTAAACCGAGGAGATGTTTTGTTTGTTCCGGCTGATATTGAGATTCACGT 1445
Query 1260 AACCGGAGAAAGTGATATGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1319
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 AACTGGAGAAAGTGATGTGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1505
Query 1320 AACA 1323
||||
Sbjct 1506 AACA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5