BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908693
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70940.1 | Symbols: PIN3, ATPIN3 | Auxin efflux carrier fami... 2998 0.0
AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier fami... 529 5e-149
> AT1G70940.1 | Symbols: PIN3, ATPIN3 | Auxin efflux carrier family
protein | chr1:26743054-26746395 FORWARD LENGTH=2563
Length=2563
Score = 2998 bits (1623), Expect = 0.0
Identities = 1831/1932 (95%), Gaps = 12/1932 (1%)
Strand=Plus/Plus
Query 1 ATGATCTCATGGCACGACCTCTATACGGTCCTCACCGCCGTGATTCCTCTCTACGTCGCC 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 117 ATGATCTCATGGCACGACCTCTACACGGTCCTCACCGCCGTGATTCCTCTCTACGTGGCC 176
Query 61 ATGATCCTCGCTTACGGCTCTGTCCGGTGGTGGAAGATCTTCTCACCCGACCAATGCTCC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 177 ATGATCCTCGCTTACGGCTCTGTCCGGTGGTGGAAAATCTTCTCACCCGACCAATGCTCC 236
Query 121 GGAATCAACCGTTTTGTTGCCATCTTCGCCGTCCCTCTCCTCTCTTTCCACTTCATCTCC 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 GGAATCAACCGTTTTGTCGCCATCTTCGCCGTCCCTCTCCTCTCTTTTCACTTCATCTCC 296
Query 181 ACTAACAATCCTTACGCCATGAATCTCCGGTTCATCGCCGCCGACACTCTCCAAAAAATC 240
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAACAATCCTTACGCAATGAATCTCCGGTTCATCGCCGCCGACACTCTCCAAAAAATC 356
Query 241 ATCATGTTGTCCCTTTTGGTCCTCTGGGCTAATCTCACCCGCTCCGGTAGCCTCGAGTGG 300
||||||||||| ||||| ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 357 ATCATGTTGTCACTTTTAGTCCTATGGGCTAATTTCACTCGCTCCGGTAGCCTCGAGTGG 416
Query 301 AGCATCACAATCTTTTCCCTCTCCACACTTCCCAACACTCTTGTTATGGGGATTCCTCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGCATCACAATCTTTTCCCTCTCCACACTTCCCAACACTCTTGTTATGGGGATTCCTCTC 476
Query 361 TTGATCGCCATGTACGGCGAATACTCTGGTTCCCTCATGGTCCAAATCGTTGTCCTCCAG 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 TTGATCGCCATGTATGGCGAATACTCTGGTTCCCTCATGGTCCAAATCGTCGTCCTCCAG 536
Query 421 TGTATCATCTGGTACACGCTTCTCCTTTTTCTTTTCGAGTTTCGCGGCGCCAAGATGCTT 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 537 TGTATCATCTGGTACACGCTTCTCCTTTTTCTCTTCGAGTTTCGTGGCGCCAAGATGCTC 596
Query 481 ATCATGGAGCAGTTCCCGGAAACAGCTGCCTCCATTGTTTCTTTCAAAGTCGAATCCGAC 540
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 597 ATCATGGAGCAGTTCCCTGAGACGGCTGCTTCCATTGTTTCTTTCAAAGTCGAATCCGAC 656
Query 541 GTCGTTTCGCTTGACGGCCATGATTTTCTTGAAACCGATGCAGAGATTGGTGACGACGGG 600
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 657 GTCGTTTCGCTCGACGGCCATGATTTTCTTGAGACCGATGCAGAGATAGGTGACGACGGG 716
Query 601 AAGCTTCACGTCACCGTGAGAAAATCCAACGCATCACGTCGTTCATTTTGCGGCCCCAAC 660
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 717 AAGCTTCACGTCACCGTGAGAAAATCCAACGCTTCACGTCGTTCGTTCTGCGGCCCGAAC 776
Query 661 ATGACACCACGGCCGTCAAATCTCACCGGAGCTGAGATTTACAGCCTAAGCACCACTCCA 720
||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 777 ATGACTCCACGGCCGTCAAATCTCACCGGAGCTGAGATTTATAGTCTCAGCACCACTCCT 836
Query 721 AGAGGCTCTAATTTTAACCACTCTGATTTTTACTCCATGATGGGTTTCCCCGGCGGCCGT 780
|||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||
Sbjct 837 AGAGGCTCTAATTTCAACCACTCTGATTTTTACAACATGATGGGTTTCCCCGGTGGTCGT 896
Query 781 CTCTCCAATTTTGGTCCGGCCGATATGTACTCTGTTCAATCTTCAAGGGGCCCCACTCCT 840
||||||||||| |||||||| ||||||||||| |||||||| || || || || ||||||
Sbjct 897 CTCTCCAATTTCGGTCCGGCGGATATGTACTCCGTTCAATCATCTAGAGGTCCAACTCCT 956
Query 841 CGACCTTCAAACTTCGAGGAGAATTGCGCGATGGCATCCTCCCCGAGATTTGGATATTAC 900
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 957 CGACCTTCAAACTTCGAGGAGAATTGCGCCATGGCATCCTCCCCGAGATTCGGGTATTAC 1016
Query 901 CCTGGAGGAGGAGCCGGGTCTTATCCGGCTCCGAATCCAGAGTTCTCCTCAACCACCACA 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1017 CCTGGAGGAGGAGCCGGGTCTTATCCGGCTCCGAATCCAGAGTTCTCTTCAACCACCACA 1076
Query 961 TCCACCGCCAATAAAGGCGTCAATAAAAACCTGAAAGACGTCACTACGAATCAGCAAACG 1020
|| |||||||||||| ||||||||||||||| ||||||||| | |||||||||||| |||
Sbjct 1077 TCTACCGCCAATAAAAGCGTCAATAAAAACCCGAAAGACGTTAATACGAATCAGCAGACG 1136
Query 1021 ACTCTTCCAACGGCCGGCAAGTCAAACAGCCATGACGCCAAGGAGCTTCACATGTTTGTC 1080
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 ACTCTTCCAACGGGCGGCAAGTCAAACAGCCATGACGCCAAGGAGCTTCACATGTTCGTC 1196
Query 1081 TGGAGCTCCAACGGGTCACCCGTTTCAGACCGCGCGGGTCTTAACGTTTTCGGCGGAGCG 1140
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 TGGAGCTCAAACGGGTCACCCGTTTCAGACCGGGCGGGTCTTAACGTTTTCGGCGGAGCA 1256
Query 1141 CCCGACAACGAACAAGGCGGAAGATCCGATCAAGGTGCCAAAGAGATCCGTATGTTAGTC 1200
|| |||||||| |||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1257 CCTGACAACGATCAAGGCGGAAGATCTGACCAAGGTGCTAAAGAGATCCGTATGTTAGTC 1316
Query 1201 CCTGATCAATCTCACAACGGCGAGAGCAAGGCTCTAGCTCATCCAGCGAGTGGAGATTTC 1260
|| |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||
Sbjct 1317 CCAGATCAATCTCACAACGGCGAGACCAAAGCTGTAGCTCATCCAGCAAGTGGAGATTTC 1376
Query 1261 GGAGGCGAACAACAATTTAGTTTCGCCGAAAAAGAAGAAGAAGGAGAGAGACCAAAAGAC 1320
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1377 GGAGGAGAACAACAATTTAGTTTCGCCGGAAAAGAAGAAGAAGCAGAGAGACCAAAAGAC 1436
Query 1321 GCCGAGAATGGTCTAAACAAACTCGCTCCAAATTCCACGGCAT---TACAATCAAAGACA 1377
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1437 GCCGAGAATGGTCTAAACAAACTTGCTCCAAATTCCACGGCGGCGCTACAATCCAAGACA 1496
Query 1378 GGTCTCGAAGGAGCCGCCGGAGGCGAAGCAAGTCAACGAAAAAATATGCCGCCGGCTAGC 1437
||||| | |||| | || ||||||||||||||||||||||||||| ||||| ||
Sbjct 1497 GGTCT--A-GGAG--G----AGCCGAAGCAAGTCAACGAAAAAATATGCCTCCGGCGAGT 1547
Query 1438 GTGATGACAAGGCTGATACTGATAATGGTGTGGAGGAAACTCATCAGAAACCCAAACACT 1497
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1548 GTGATGACAAGGCTGATACTGATAATGGTTTGGAGGAAACTCATCAGAAACCCAAACACT 1607
Query 1498 TACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGCTTTCCGGTGGCACGTGGCAATG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGCTTTCCGGTGGCACGTGGCAATG 1667
Query 1558 CCCAAAATCATTCAACAATCTATCTCCATTCTATCTGATGCTGGTCTTGGAATGGCAATG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 CCCAAAATCATTCAACAATCTATCTCCATTCTATCTGATGCTGGTCTTGGAATGGCAATG 1727
Query 1618 TTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATTAATCGCTTGTGGGAACTCCGTG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1728 TTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATTAATCGCTTGTGGGAATTCAGTG 1787
Query 1678 GCAACGTTTGCGATGGCGGTTAGATTCCTTACGGGTCCGGCCGTGATGGCGGTTGCTGCT 1737
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1788 GCAACGTTTGCCATGGCGGTTAGGTTCCTTACGGGTCCGGCCGTGATGGCGGTTGCTGCT 1847
Query 1738 ATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 ATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCT 1907
Query 1798 CAAGGAATTGTGCCCTTTGTGTTTGCAAAGGAGTACAATGTTCATCCTGCTATTTTAAGT 1857
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1908 CAAGGAATTGTGCCCTTTGTGTTTGCGAAGGAGTACAATGTTCATCCTGCTATTTTAAGT 1967
Query 1858 ACAGGGGTAATATTCGGAATGCTTATAGCGCTTCCGATCACGCTGGTTTACTACATTCTA 1917
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 ACAGGGGTAATATTTGGAATGCTTATAGCGCTTCCGATCACGCTGGTTTACTACATTCTA 2027
Query 1918 CTCGGGTTATAA 1929
||||||||||||
Sbjct 2028 CTCGGGTTATAA 2039
> AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier family
protein | chr1:8180577-8183570 REVERSE LENGTH=2215
Length=2215
Score = 529 bits (286), Expect = 5e-149
Identities = 439/515 (85%), Gaps = 2/515 (0%)
Strand=Plus/Plus
Query 1416 AAAAAATATGCCGCCGGCTAGCGTGATGACAAGGCTGATACTGATAATGGTGTGGAGGAA 1475
|||| ||||||| || || || |||||||| |||||||| |||||||||||||||||||
Sbjct 1511 AAAACATATGCCACCAGCGAGTGTGATGACTCGGCTGATATTGATAATGGTGTGGAGGAA 1570
Query 1476 ACTCATCAGAAACCCAAACACTTACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGC 1535
|||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1571 ACTCATAAGAAACCCAAACACTTACTCTAGTCTCATTGGTCTCATTTGGGCTCTTGTTGC 1630
Query 1536 TTTCCGGTGGCACGTGGCAATGCCCAAAATCATTCAACAATCTATCTCCATTCTATCTGA 1595
|||| ||||| | ||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 1631 TTTCAGGTGGGATGTGGCAATGCCTAAAATTATTCAACAATCAATCTCAATTCTTTCTGA 1690
Query 1596 TGCTGGTCTTGGAATGGCAATGTTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATT 1655
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1691 TGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGCAACCGAAATT 1750
Query 1656 AATCGCTTGTGGGAACTCCGT-GGCAACGTTTGCGATGGCGGTTAGATTCCTTACGGGTC 1714
||| ||||| || || || | ||| || |||||||||||||| |||||| |||| || |
Sbjct 1751 AATTGCTTGCGGAAATTC-GACGGCGACTTTTGCGATGGCGGTGAGATTCTTTACTGGAC 1809
Query 1715 CGGCCGTGATGGCGGTTGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCG 1774
| || || ||||| || || || || || || ||||||||||| || || ||||||| |
Sbjct 1810 CAGCGGTAATGGCCGTGGCAGCAATGGCTATTGGATTACGTGGAGACCTATTGCGTGTGG 1869
Query 1775 CTATAGTTCAGGCCGCATTACCTCAAGGAATTGTGCCCTTTGTGTTTGCAAAGGAGTACA 1834
| || ||||| || ||||| |||||||| || ||||| |||||||||||||| ||||| |
Sbjct 1870 CCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAAGAGTATA 1929
Query 1835 ATGTTCATCCTGCTATTTTAAGTACAGGGGTAATATTCGGAATGCTTATAGCGCTTCCGA 1894
|||||||||| || || || ||||||||||||||||| ||||||||||| || || ||||
Sbjct 1930 ATGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTTGGAATGCTTATCGCACTACCGA 1989
Query 1895 TCACGCTGGTTTACTACATTCTACTCGGGTTATAA 1929
| || || |||||||||||| |||||||| |||||
Sbjct 1990 TTACACTTGTTTACTACATTTTACTCGGGCTATAA 2024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5