BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908719
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:268... 2200 0.0
> AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:26824677-26826748
FORWARD LENGTH=1543
Length=1543
Score = 2200 bits (1191), Expect = 0.0
Identities = 1354/1435 (94%), Gaps = 2/1435 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCCACGGAGAAGAAGTAAACAAGAAA 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 86 ATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAAGAAGTAAACAAGAAA 145
Query 61 GATGGGTTTTTGCGGGAGATGAAGAGGCTTGGTTACATCGCCGGTCCCATGATTGCTGTG 120
||||||||||||||||| | ||||| ||| |||||||||||||||| |||||||| |||
Sbjct 146 GATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGTCCGATGATTGCAGTG 205
Query 121 AACTCGTCTATGTATGTTCTTCAGGTGATATCGATTATGATGGTTGGTCATCTCGGTGAG 180
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 206 AACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTTGGTCATCTCGGTGAG 265
Query 181 CTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTCACCGGTTTCAGCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTCACCGGTTTCAGCGTC 325
Query 241 CTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTGTGGTCAAGCTAATGGGGCTAAGCAA 300
| ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 326 GTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCTAATGGAGCTAAGCAA 385
Query 301 T-TCGAGAAGCTTGGTGTTCATACTTACACAGGGATTGTCTCTTTATTTCTTGTGTGTAT 359
| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 386 TAT-GAGAAGCTTGGTGTTCATACTTACACAGGAATTGTCTCTTTGTTTCTTGTGTGTAT 444
Query 360 TCCTCTGTCTGTGCTATGGAGTTACATGGGTGATATACTTTCTCTGATTGGACAAGATCC 419
|||||| ||| | || |||| ||||| ||||||||||||||||| |||||||||||| |
Sbjct 445 TCCTCTCTCTCTTCTCTGGACATACATTGGTGATATACTTTCTCTTATTGGACAAGATGC 504
Query 420 TATGGTTGCTCAACAAGCAGGAAAGTTTGCGACTTGGCTCATACCCGCGCTCTTTGGTTA 479
||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 505 TATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATACCCGCGCTCTTTGGTTA 564
Query 480 CGCTATTTTGCAGCCTCTTGTTCGGTTTTTCCAAGCGCAGAGTCTGATTTTGCCTTTGAT 539
||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 565 CGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAAGCACAGTCTCTGATTTTGCCTTTGGT 624
Query 540 TATGAGCTCAGTCTCTTCTCTCTGTGTCCACGTTGTCCTCTGTTGGAGCTTGGTCTTTAA 599
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 625 TATGAGTTCAGTCTCTTCTCTCTGTATCCACATTGTCCTCTGTTGGAGCTTGGTCTTTAA 684
Query 600 GTTTGGTCTTGGGAGCGTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGT 659
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGT 744
Query 660 GATTGTTCTTGGATTATACATGACGTTTTCTTCCAGCTGTAGCAAGAGCCGTGCAACTAT 719
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 745 GACTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTAT 804
Query 720 CTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTCGGAATCCCATCAGCGTC 779
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 805 CTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATC 864
Query 780 TATGATTTGCCTCGAGTGGTGGTCATTCGAATTTTTGGTCCTGCTCTCTGGGATTTTACC 839
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 865 TATGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAGTCCTGCTCTCTGGTATTTTACC 924
Query 840 AAATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACACAAGCCTCCTTGTA 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 925 AAATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACACAATCCTCCTTGTA 984
Query 900 CCAAGTCCCAGAGAGTCTCGGCGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAGC 959
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 985 CCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAGC 1044
Query 960 TGGCAACCCGAAACAAGCTCGAAAGGCGGTTTACACAGTGATGGTTATAACAAGTGTAGA 1019
||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 1045 TGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAGA 1104
Query 1020 ATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATTTGGTTACCTATTCAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATTTGGTTACCTATTCAG 1164
Query 1080 CTCTGAAACTGAAGTTGTAGATTATGTAAAAACAATGGCTCCACTGGTTTCTTTATCGGT 1139
|||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 1165 TTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCGGT 1224
Query 1140 CATATTTGATGCCCTTCACGCAGTTCTCTCCGGTGTGGCTAGAGGATCAGGGAGGCAAGA 1199
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1225 CATATTCGATGCCCTTCACGCAGCTCTCTCGGGTGTGGCTAGAGGATCAGGGAGGCAAGA 1284
Query 1200 TATTGGGGCTTACGTAAACCTAGCAGCATACTATCTCTTTGGGATACCAACTGCTATAAT 1259
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1285 TATTGGGGCATACGTAAACCTAGCAGCATACTATCTCTTTGGAATACCAACTGCTATACT 1344
Query 1260 ATTAGCTTTTGGGTTTAAAATGATAGGAAGAGGACTCTGGATTGGGATCACAGTTGGATC 1319
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1345 ATTAGCTTTTGGGTTTAAAATGAGAGGAAGAGGACTCTGGATTGGAATCACAGTTGGGTC 1404
Query 1320 CTTTGTACAAGCTGTTTTGCTCGGGCTTATCGTCATCCTTACCAACTGGAAAAAACAGGC 1379
| ||||||||||||||||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 1405 ATGTGTACAAGCTGTTTTGCTCGGTCTTATCGTAATCCTCACTAATTGGAAAAAACAGGC 1464
Query 1380 GAGAAAGGCTAGAGAAAGAGTGATGGGTGATGAGTATGAAGAGAAAGAGAGTGAA 1434
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1465 GAGAAAGGCTAGAGAAAGAGTGATGGGTGATGAGTATGAAGAGAAAGAAAGTGAA 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5