BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908768 Length=1506 Score E Sequences producing significant alignments: (Bits) Value AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfa... 2196 0.0 > AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfamily | chr1:26983721-26985990 FORWARD LENGTH=1623 Length=1623 Score = 2196 bits (1189), Expect = 0.0 Identities = 1409/1514 (93%), Gaps = 19/1514 (1%) Strand=Plus/Plus Query 1 ATGCAAACGCTTCTCTATCAGCCATGTAAGTCTCTTCCTATATTCACTTCTTCTTCTTCT 60 |||||||||||||||| ||||||||||||||||||||||||| ||||| |||| || | Sbjct 24 ATGCAAACGCTTCTCTGTCAGCCATGTAAGTCTCTTCCTATACTCACTGCTTCGTC--GT 81 Query 61 CCGTCGTCGTCGATTCGTAGCTCCGGCGATGCGAGAGAATGTATCTACTTTAAAGCATCG 120 ||||||||| ||||||||||||||| |||| | ||||||||||| | |||| ||| ||| Sbjct 82 -CGTCGTCGTTGATTCGTAGCTCCGGTGATGTGCGAGAATGTATCGATTTTAGAGCGTCG 140 Query 121 GAGAAAGTATCGCAGTTTCAATTTCATGAAACCCTAAG-TCCTTTTCGGTTTCGTAGTTT 179 |||||||| ||| ||||||||||||||| ||||||||| ||||| | |||||| |||| Sbjct 141 GAGAAAGTCTCGAAGTTTCAATTTCATGTAACCCTAAGCCCCTTTGC-CTTTCGTGGTTT 199 Query 180 CGCAATTTGTCGCGATTTTGCTACTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 239 | |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 200 CTCAATATGTCGCGAATTTGCTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 259 Query 240 CGATGTTTCCGGTGTTGAAAATGGAGGAATTGTGGCGGAGGAGGAGCTTGAGCTATTGAA 299 |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| Sbjct 260 AGATGTTTCCGGTGTTGGAAATGGAGGAATCGTGGCGGAGGAGGAGATTGAGCTATTGAA 319 Query 300 CAAGCCGAGTCCTGTACCGAAATCGGAAAATGAGAAGGAGAATGGTAAAGCAGACGATGA 359 |||||||| |||| |||| ||||| |||||| | |||||| |||||||||||||||||| Sbjct 320 CAAGCCGAATCCTTTACCAAAATCAGAAAAT--G-AGGAGAGTGGTAAAGCAGACGATGA 376 Query 360 CGAGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCAGAAGGAGAAGGAGAGGGAGTTGA 419 || ||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||| Sbjct 377 CGCGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCGGAAGAAGAAGGGGAAGGAATTGA 436 Query 420 ATCGGAA------GAGGAGACGGATAGAGTCAGTGTAGAGTATTACGATCCCAAACCAGG 473 ||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 437 ATCGGAAGTTTCGGATGAGACGGATAGAGTCAGCGTAGAGTATTATGATCCTAAACCAGG 496 Query 474 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAGTATCGG 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 497 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAATATTGG 556 Query 534 TGCGGATATGTTGGGAACTATGTTGACGAAAGAGATTCTTCCTTTGTATGATAAAGAGTT 593 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 557 TGCAGATATGTTGGGAACTATGTTGACGAAAGAGATACTTCCTTTGTATGATAAAGAGTT 616 Query 594 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAATTTTTGGTTAATGGGAAAAT 653 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 617 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAGTTTTTGGTTAATGGGAAAAT 676 Query 654 GGGGATTGTTAAGGATGATGATGATGAAGGTGTTGAAATTGCGGAATTTGCACGGCAAGG 713 |||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 677 GGGGATTGTTAA-G--GATGATGATGAAGGTGTTGAGATTGCGGAGTTTGCTCGGCAAGG 733 Query 714 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCAGAGGTTTTAGGGAGGACGTTAAG 773 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 734 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCGGAGGTTTTAGGGAGGACGTTGAG 793 Query 774 TGGAAGACCTTTGCTTTCTTCTAGACGGTACTTTCGGAGAATCGCTTGGCACCGAGTGAG 833 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 794 TGGAAGACCTTTGCTTTCTTCTAGACGGTATTTTCGGAGAATCGCTTGGCACCGAGTGAG 853 Query 834 GCAGATTAAGCAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACAGGAGG 893 |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 854 GCAGATCAAACAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACTGGAGG 913 Query 894 ACTTCTCACCAGAATTGAGGGTTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 953 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 914 GCTTCTCACCAGAATTGAGGGCTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 973 Query 954 AGTGATCAGTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGACTCCTTGTGCAGATAAC 1013 ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 974 AGTGAACACTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGATTCCTTGTGCAGATAAC 1033 Query 1014 GCGACTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1073 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 GCGATTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1093 Query 1074 GTACCTTCGAGAAGGAACACTATTAGAAGGAACAGTTGCCAAAATCTTACCATATGGAGC 1133 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1094 GTACCTTCGAGAAGGAACACTCTTAGAAGGAACAGTTGTCAAAATCTTACCATATGGAGC 1153 Query 1134 TCAAGTCAAACTCGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1193 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1154 TCAAGTCAAACTTGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1213 Query 1194 AAGAAGAATTGGATCGGTGAGCGATGTACTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1253 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1214 AAGAAGAATTGGATCGGTGAGCGATGTGCTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1273 Query 1254 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1333 Query 1314 GGGCTTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAGGCTGAAGAGATGGCAAAGAA 1373 || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1334 AGGATTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAAGCTGAAGAGATGGCGAAGAA 1393 Query 1374 GTATAGAGAAAAGATGCCTTCGGTGACTACAAG-CGCGATATCTGATCATCCTCCAATCA 1432 ||| |||||||| ||||||| |||| ||||||| | | || ||||||| |||||| |||| Sbjct 1394 GTACAGAGAAAAAATGCCTTTGGTGGCTACAAGTC-CAATTTCTGATCGTCCTCCGATCA 1452 Query 1433 CAGGCAGTTTCCCTCAAGACAAGGATGAAGAAATCTATGCTAACTGGGACTGGGTCAAGT 1492 || |||||||||| || | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 1453 CAAGCAGTTTCCCACAGGGCAAGGATGAAGAAATCTATGCTAACTGGGAGTGGTTCAAGT 1512 Query 1493 TCGAGAGTCAGTGA 1506 |||||||||||||| Sbjct 1513 TCGAGAGTCAGTGA 1526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74296806600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5