BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909416
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77920.1 | Symbols: | bZIP transcription factor family prot... 1000 0.0
AT1G22070.1 | Symbols: TGA3 | TGA1A-related gene 3 | chr1:77893... 701 0.0
> AT1G77920.1 | Symbols: | bZIP transcription factor family protein
| chr1:29298243-29300863 FORWARD LENGTH=1826
Length=1826
Score = 1000 bits (541), Expect = 0.0
Identities = 640/685 (93%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 451 TTAGGACTATCTGGGAGTATTAACACAGGGATTGCTTCATTTGAGATGGAATATTCACAC 510
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 887 TTAGGACCATCTGGGAGTATTAACACAGGGATTGCATCATTTGAGATGGAATATTCACAC 946
Query 511 TGGCTTCAAGAACAAAGCAGGAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 570
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 947 TGGCTACAAGAACAAAGCAGAAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 1006
Query 571 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCGAATCTGTTT 630
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1007 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCTAATCT-TTT 1065
Query 631 -CGAATGAAATCTGATGCAGCGAAAGCAGATGTTTTCTACTTGATATCGGGAATGTGGAG 689
| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 1066 CCAAATGAAATCCGATGCAGCAAAAGCCGATGTTTTCTACTTGATATCGGGAATGTGGCG 1125
Query 690 AACTTCAACTGAAAGGTTCTTTCAGTGGATTGGAGGATTTCGTCCATCCGAGCTTTTAAA 749
||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 1126 AACTTCAACCGAAAGATTCTTCCAATGGATTGGAGGGTTTCGTCCATCCGAACTTTTAAA 1185
Query 750 CGTTGTGATGCCTTATCTTCAACCATTAACCGATCAACAAGTCTTGGAAGTGAGAAACCT 809
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1186 CGTTGTGATGCCTTATCTTCAACCATTAACGGATCAACAAATCTTGGAAGTGAGAAACCT 1245
Query 810 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 1305
Query 870 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTC------T---C--AC--A 916
|||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 1306 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTCCACGCATTATCCCACTCA 1365
Query 917 --TGGCTGCAGCAATAGAGAATCTTCAAGCATTAGAGGGATTTGTGAATCAAGCAGATCA 974
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1366 CATGGCTGCAGCTATAGAGAATCTTCAAGCATTAGAAGGATTTGTGAATCAAGCAGATCA 1425
Query 975 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTGACGACAAGACAATCAGCTCG 1034
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1426 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTAACGACAAGACAATCGGCTCG 1485
Query 1035 AGGTCTACTTGCTTTGGGAGAGTATCTTCACAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1094
|||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1486 AGGTTTACTAGCTTTAGGAGAGTATCTTCATAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1545
Query 1095 AGCTCGTCCACGAGAACCCACTTAA 1119
||||||||||| |||||| ||||||
Sbjct 1546 AGCTCGTCCACAAGAACCAACTTAA 1570
Score = 688 bits (372), Expect = 0.0
Identities = 404/419 (96%), Gaps = 3/419 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 523
Query 61 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 583
Query 121 CCCAATACTGCTACTTCCTCGATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 584 CCCAATACTGCTACTTCCTCTATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 643
Query 181 --C-TCAAGATGAATTATGATTCTTCGCATAACCAGAACGAAGCAGAACAACCATCTAGT 237
| ||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 644 AACATCAAGATAAATTATGATTCTTCTCATAACCAGATCGAAGCAGAACAACCTTCTAGT 703
Query 238 AATGATAATCAAGATGATGATGGCAGGACTCATGATAAGATGAAACGGCGTTTAGCGCAG 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 704 AATGATAATCAAGATGATGATGGCAGGATTCATGATAAGATGAAACGGCGTTTAGCGCAG 763
Query 298 AACCGTGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAACAGCTAGAA 357
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 764 AACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAGCAGTTAGAG 823
Query 358 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGCTAAGCAGCAGGG 416
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 824 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGTTAAGCAGCAGGG 882
> AT1G22070.1 | Symbols: TGA3 | TGA1A-related gene 3 | chr1:7789348-7792114
FORWARD LENGTH=1751
Length=1751
Score = 701 bits (379), Expect = 0.0
Identities = 748/921 (81%), Gaps = 45/921 (5%)
Strand=Plus/Plus
Query 227 AACCATCTAGTAATGATAATCAAGATGATGATGGCAGGACTC-ATGATAAGATGAAACGG 285
|||| || |||||| || ||| || || || | | ||| || |||||||||||||||||
Sbjct 551 AACCGTCGAGTAATAATGATC-AG--GACGAAGACCGGA-TCAATGATAAGATGAAACGG 606
Query 286 CGTTTAGCGCAGAACCGTGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTT 345
||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 607 CGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTT 666
Query 346 CAACAGCTAGAAGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAA-AGGC 404
|||||| |||||||||||||||| ||||| || ||| | ||||| ||||| | || || |
Sbjct 667 CAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGCTCGAGCAGGAACTTGTAAGAG-C 725
Query 405 TAAGCAGCAGGGATTATGCGTGCGCAACTCGTCAGATTCTAGCTA-CTTAGGACTATCTG 463
|| |||||||||||||||||| ||||| || |||||| |||| || || ||||| | |||
Sbjct 726 TAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCT-AGGACCAGCTG 784
Query 464 GGAGTATTAACACAGGGATTGCTTCATTTGAGATGGAATATTCACACTGGCTTCAAGAAC 523
||| ||| ||| |||| |||||| |||||||||||||||| |||||||||| |||| |
Sbjct 785 GGAATATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGC 844
Query 524 AAAGCAGGAGAGTTAGCGA-ACTACGAACAGCGCTTCAATCTCATATAAGCGACATAGAA 582
||| |||||||||||| || | | ||||||||||| ||| |||||||| | ||||| ||
Sbjct 845 AAAACAGGAGAGTTAGTGAGATT-CGAACAGCGCTCCAAGCTCATATAGGTGACATTGAG 903
Query 583 CTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCGAATCTGTTTCGAATGAAATCT 642
||||| ||| | ||||| |||||||||||||| ||||| ||||| || || |||||| ||
Sbjct 904 CTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCT 963
Query 643 GATGCAGCGAAAG-CAGATGTTTTCTACTTGATATCGGGAATGTGGAGAACTTCAACTGA 701
||||| || |||| | ||||| |||| |||||| |||||||||||| |||||||||||||
Sbjct 964 GATGCTGC-AAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAACTTCAACTGA 1022
Query 702 AAGGTTCTTTCAGTGGATTGGAGGATTTC-GTCCATCCGAGCTTTTAAACGTTGTGATGC 760
| | ||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||||
Sbjct 1023 ACGCTTCTTCCAATGGATTGGAGG-TTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGC 1081
Query 761 CTTATC-TTCAACCATTAACCGATCAACAAGTCTTGGAAGTGAGAAACCTCCAACAATCA 819
| || | || | || ||||||||||| ||| | ||||| ||| | ||||| ||||| ||
Sbjct 1082 CATA-CGTTGAGCCCTTAACCGATCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCG 1140
Query 820 TCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATT-GATAAACTTCAACAGAGTTTAG- 877
|| || ||||||||||| ||||| |||||||| || ||||||||||| ||| |||| |
Sbjct 1141 TCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGC-TTAGATAAACTTCAGCAGGGTTTGGT 1199
Query 878 CTGAAAGCATTGTGATT--GATGCG-GTTATCGAGTCT------CAC--------A-TGG 919
| |||||||| | ||| ||| ||| | |||||| ||| | |||
Sbjct 1200 C-GAAAGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGG 1258
Query 920 CTGCAGCAATAGAGAATCTTCAAGCATTAGAGGGATTTGTGAATCAAGCAGATCATCTGA 979
|| |||| || ||||||||||||||||| ||| | |||||||| || || ||||||||||
Sbjct 1259 CTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATCATCTGA 1318
Query 980 GGCAACAAACTTTGCAACAAATG-GCGAAGATCTTGACGACAAGACAATCAGCTCGAGG- 1037
| ||||| || |||| |||||| | ||||| |||||||||||||| | ||||||||
Sbjct 1319 GACAACAGACCCTGCAGCAAATGAGT-AAGATATTGACGACAAGACAGGCTGCTCGAGGG 1377
Query 1038 TCTACTTGCTTTGGGAGAGTATCTTC-ACAGACTTCGTGCTCTTAGTTCTCTTTGGGCAG 1096
| | || ||| | ||||| || |||| |||| || ||||||||||||||||| |||||||
Sbjct 1378 T-TGCTCGCTCTAGGAGAATA-CTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAG 1435
Query 1097 CTCGTCCACGAGAACCCACTT 1117
||||||||||||||| |||||
Sbjct 1436 CTCGTCCACGAGAACACACTT 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5