BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909552

Length=2262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21820.1 | Symbols:  | unknown protein; Has 45 Blast hits to...  65.8    2e-09


> AT2G21820.1 | Symbols:  | unknown protein; Has 45 Blast hits 
to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9302885-9303247 REVERSE 
LENGTH=363
Length=363

 Score = 65.8 bits (35),  Expect = 2e-09
 Identities = 44/48 (92%), Gaps = 1/48 (2%)
 Strand=Plus/Plus

Query  2066  ATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAA-AAC  2112
             |||||| |||||||||||||||||||||||||||||||  |||| |||
Sbjct  22    ATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAAC  69



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 112248418620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5