BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909652 Length=1377 Score E Sequences producing significant alignments: (Bits) Value AT1G80600.1 | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:3029... 2213 0.0 > AT1G80600.1 | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298499-30300553 REVERSE LENGTH=1590 Length=1590 Score = 2213 bits (1198), Expect = 0.0 Identities = 1319/1378 (96%), Gaps = 5/1378 (0%) Strand=Plus/Plus Query 1 ATGGCGTCTCTTGGCCAAATCACCCTGCCACGCGCGCCGTCGTCTGAGATTGGCGTCTTT 60 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 41 ATGGCGTCTCTTAGCCAAATCACCCTGCCACGCGCGCCGTCGTCGGAGATTGGCCTCTTA 100 Query 61 CGCCGTCGATTTGAACGACCGATCATCAGAACCCGGATCGGATTCAGCGGCCGGATAGCG 120 ||||||||||| || || |||||||||||||||||||||||||||| ||||||||| ||| Sbjct 101 CGCCGTCGATTGGAGCGGCCGATCATCAGAACCCGGATCGGATTCAACGGCCGGATTGCG 160 Query 121 AGCGTATTGACAAACGCAGGGGAACAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 180 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 161 AGCGTATTGACTAACGCAGGGGACCAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 220 Query 181 GTGATTGAAGAGGAAGCTAAAGTTATTGTGGGTACCTACGCGCGAGCGCCAGTGGTGCTT 240 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 221 GTGATTGAAGAGGAAGCCAAAGTTATTGTGGGTACCTACGCGCGAGCTCCAGTGGTTCTC 280 Query 241 TCAAGTGGGAAAGGTTGTAAATTGTTCGACCCAGAAGGGAAAGAGTATCTGGATTGTGCA 300 || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 281 TCGAGTGGGAAAGGTTGTAAATTGTTCGACCCTGAAGGAAAAGAGTATCTGGATTGTGCA 340 Query 301 TCTGGAATTGCTGTGAATGCTCTTGGCCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 360 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 341 TCTGGAATCGCTGTGAATGCTCTTGGTCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 400 Query 361 GACCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTCTATTACACGATCCCTCAGCAGATA 420 || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 401 GAGCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTTTATTACACGATCCCT---CAGATA 457 Query 421 GAGCTCGCAAAACGCTTGGTGGCAAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCT 480 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 458 GAGCTCGCAAAACGCTTGGTGGCGAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCG 517 Query 481 GGAACGGAAGCCAATGAAGCAGCCATCAAGTTTTCAAGAAAGTTCCAGAGATTCACCCAT 540 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 518 GGAACGGAAGCCAATGAAGCAGCCATTAAGTTTTCAAGAAAATTCCAGAGATTCACCCAT 577 Query 541 CTAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 600 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 578 CCAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 637 Query 601 ACCTTAGGAGCTCTTGCTTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 660 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 638 ACCTTAGGAGCTCTTGCCTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 697 Query 661 ATGCCAGGTGTAACATTCTTAGAATATGGTAACATTCAAGCCGCCACAGACCTTATCCGC 720 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 698 ATGCCTGGTGTAACCTTCTTAGAATATGGTAACATTCAAGCAGCCACAGACCTTATCCGC 757 Query 721 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 817 Query 781 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 877 Query 841 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 937 Query 901 TTCTGTGTAACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 960 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 TTCGGTGTGACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 997 Query 961 GGAGCGGTGCTCGTGACTGAAAAGGTTGCAGAGACCATAAAATACGGAGATCACGGAAGT 1020 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 998 GGAGCGGTGCTGGTGACTGAAAAGGTTGCAGAGACCATAAACTACGGAGATCATGGAAGT 1057 Query 1021 ACATTTGCAGGCAACCCTCTTGTGTGCAGTGCAGCCATTGCAGTCATTGATAAAGTATCG 1080 ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1058 ACATTTGCAGGCAGCCCTCTTGTGTGCAGTGCAGCCATTGCAGTTATGGATAAAGTATCG 1117 Query 1081 AAGCCCTCTTTCTTGTCCAGTGTCTCAATTAAAGGTCGATACTTTAGAGACCTGTTGGTT 1140 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1118 AAACCCTCTTTCTTGTCCAGTGTCTCAAATAAAGGTCGATACTTTAGAGACCTGTTGGTG 1177 Query 1141 AAAAAACTTGGTGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1200 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 AAAAAACTTGGAGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1237 Query 1201 GTGGAACTCGATGTGCCGGCAAATTCACTGGTCGATGCTTGCCGAGATTCGGGTCTTCTG 1260 ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1238 GTGGAGCTCGATGTGCCGGCAAGCTCACTGGTTGATGCTTGCCGAGATTCGGGTCTTCTG 1297 Query 1261 ATTTTGACAGCAGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1320 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 ATCTTGACAGCGGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1357 Query 1321 GAGGAAATCGAACGTGCGGTTGAGATAATGT-TCCAAAATTTAATTGTGCTTGACTGA 1377 |||||||||||||||||||||||||| |||| || ||||||| | || |||||| ||| Sbjct 1358 GAGGAAATCGAACGTGCGGTTGAGATCATGTCTC-AAAATTTGACTGCGCTTGATTGA 1414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67820936295 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5