BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909804 Length=930 Score E Sequences producing significant alignments: (Bits) Value AT1G01680.1 | Symbols: ATPUB54, PUB54 | plant U-box 54 | chr1:2... 1471 0.0 > AT1G01680.1 | Symbols: ATPUB54, PUB54 | plant U-box 54 | chr1:246411-248367 REVERSE LENGTH=965 Length=965 Score = 1471 bits (796), Expect = 0.0 Identities = 886/930 (95%), Gaps = 3/930 (0%) Strand=Plus/Plus Query 1 ATGGAAGACGCCATTTATGTTGCAGTGAATCAAGATGTTCGAGAAAGTaaaaaaaCTTTG 60 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39 ATGGAAGACGCCATATATGTTGCAGTGAATCAAGATGTTCGAGAAAGTAAAAAAACTTTG 98 Query 61 TTATGGACATTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 120 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 TTATGGGCTTTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 158 Query 121 TTTTCGTTGACCACTTCCTCAAGTAGGTTTGAACAAAGTGAGATCGATGCAATCCAAGAT 180 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 159 TTTTCGTTGACCACTTCTTCAAGTAGGCTTGAACAAAGTGAGATCGATGCAATCCAAGAT 218 Query 181 TCAGAACTGAATACTTCAGTTAATAGCCTCTACAAGTACCGTGATATCTGCATAAACAAA 240 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 219 TCAGAACTGAATACTTCAGTAAATAGCCTCTACAAGTACCGTGATATCTGCATAAAC-AA 277 Query 241 GGAGGGGTTAATGAAGAAGATGTGGATACATCATTGATCTCAGGACATGATGTGGGGGAA 300 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 278 --AGGGGTTAATGAAAAAGATGTGGATACATCAATGATCTCAGGACATGATGTGGGGGAA 335 Query 301 GGGATTGTGGAACTCATGTATCAAAACAATATCACGAAGCTGGTTATGGGAGCAGCAGCT 360 ||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||||| Sbjct 336 GGGATTGTGGAACTCATCTATCAAAACATTATCACGAACCTCGTTATGGGAGCAGCAGCT 395 Query 361 GATTCTCACTATTCCAGGGGAATGTCCATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 420 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 396 GATCCTCACTATTCCAGGGGAATGTCTATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 455 Query 421 CATGCACCTCGTAGCTGTAAAATGTGGTTCATCTGCAAGGGGAAACTCATCAAGAAAAGA 480 |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 456 CATGCACCTCATAGCTGTAAAATATGGTTCATCTGCAAGGGGAAACTCATCAAGCAAAGA 515 Query 481 GAAAGAAGTTTCGACATCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 540 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 GAAAGAAGTTTCTACCTCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 575 Query 541 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAATATGAAACAGAGTCACCTAAA 600 ||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||| Sbjct 576 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAAGAGGAACCCGAGTCACCTAAA 635 Query 601 GAACATCCAGTTTGGATACTAGAACCCGAGGAATCACCAAAGAAAGGAAAGAAGGAACCT 660 |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 636 GAACATCCAGGTTGGATACTAGAACCTGAGGAATCACCAAAGAAAGGAAGGAAGGAAACT 695 Query 661 GCAGAGAAGTCAAAAAGCAATGGGAGCGATGAAGACTCACGCCTCGAAGATTTCAAGTGT 720 |||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||| Sbjct 696 ATAGAGAAATCAAAAAGCAATGAGAGCGATGAAGACCCACGTCTCGAAGATTTCAAGTGT 755 Query 721 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 815 Query 781 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCGCCAAAGACAAACAAG 840 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 816 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCTCCAAAGACAAACAAG 875 Query 841 CCGCTTGAGAATCATAATCTTGTTCCAAATCACACTCTTCGTATAATCATTAAAGACTGG 900 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 876 CCGCTTGAGAATCACAATCTCGTTCCAAATCACACTCTTCGTATAATCATAAAAGATTGG 935 Query 901 CTCGAGAAGAACCCAAATCATAAACATTGA 930 || ||||||||||||||| |||||| |||| Sbjct 936 CTGGAGAAGAACCCAAATTATAAACGTTGA 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45461903035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5