BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909871 Length=897 Score E Sequences producing significant alignments: (Bits) Value AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1308 0.0 > AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1322 Length=1322 Score = 1308 bits (708), Expect = 0.0 Identities = 843/904 (93%), Gaps = 26/904 (3%) Strand=Plus/Plus Query 1 ATGGCGGCCTCTTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCATCTCACAATGCC 60 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 231 ATGGCGGCCTCCTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCGTCTCACAATGCA 290 Query 61 ATTCCCAAATACAAAACCCTAA--TC-TCTTCTTCTTACGCTTACTTAGAAtctctgaaa 117 |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 291 ATTCCCAAATACAAAACCCTAATCTCTTCTTCTTCTTACTCTTACTTAGAATCTCTGAAA 350 Query 118 cctcaattctcttcttccaattcttttcacctctcttctctttctcGTCCCTTTGTAGCT 177 | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 351 CTTCAATTCTCTTCTTCCAATTCTTTTCATCACTCTTCTCTTTCTCGTCCCTTTGTAGCT 410 Query 178 C-ACCAACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGATgaagaagaaga 236 | ||| ||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 411 CAACC-ACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGAT---GAAG-A-A 464 Query 237 agaagaagttaaaggagaaggagaagtgaaaactggagaaggagaaaCCAATGGAGATAG 296 | |||||| | || | || ||| ||| ||||||| |||| ||||| |||||| Sbjct 465 A-AAGAAG----A--AG-A--AGTAGT-TAAA--GGAGAAGCAGAACCCAATAAAGATAG 511 Query 297 TGTCGTCTCGGAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 356 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 TGTCGTCTCCAAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 571 Query 357 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 631 Query 417 AATCTCTGTTGAGGT---ATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGATA 473 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 632 AATCTCTGTAGAGGTGGTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGGTA 691 Query 474 CGTCACAATGGGTTCTATAAACTCTGCCAAAATCGCAATTGCTTCGCTTGATGGAACAGA 533 ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 692 CGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATGGAACAGA 751 Query 534 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCCGTTGACATGAATCCAGGAGCCAGAAG 593 ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 752 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACAAGAAG 811 Query 594 AAACCCTGAAGTCTTGAATTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAATACAA 653 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 812 AAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAACACAA 871 Query 654 GGTTTATGTCGGAAACCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAGACCACTTCAG 713 ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || Sbjct 872 GGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACCACTTTAG 931 Query 714 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAAAAACAG 773 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 932 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAGAAACAG 991 Query 774 AGTCTTTGCCTTTCTTTCTTTTACAAACAGTGAAGAACGTGATGCGGCTTTATCATTGAA 833 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || Sbjct 992 AGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAA 1051 Query 834 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATAGAGAAGAGTGAGGC 893 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1052 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATCGAGAAGAGTGAGTC 1111 Query 894 GTAA 897 |||| Sbjct 1112 GTAA 1115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43804176184 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5