BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909946 Length=1482 Score E Sequences producing significant alignments: (Bits) Value AT1G02850.4 | Symbols: BGLU11 | beta glucosidase 11 | chr1:6305... 913 0.0 AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:222216... 167 3e-40 > AT1G02850.4 | Symbols: BGLU11 | beta glucosidase 11 | chr1:630505-633259 FORWARD LENGTH=1804 Length=1804 Score = 913 bits (494), Expect = 0.0 Identities = 539/561 (96%), Gaps = 2/561 (0%) Strand=Plus/Plus Query 242 TCACTGCAGGACACTCCGGAGTAGCAGCTGGAAGTGTTGCATGTGACCAGTATCACAAAT 301 ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 256 TCA-TGCCGGACACTCCGGAGTAGCAGCTGGAAATGTTGCATGTGACCAGTATCACAAAT 314 Query 302 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCCATAT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 315 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCTATAT 374 Query 362 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATTAATGTCAAGGGGCTACAATACT 421 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 375 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATCAATCCCAAGGGGCTACAATACT 434 Query 422 ACAACAGTCTTATTGATGAATTGATCGCTCATGGAATCCAGCCACACGTTACATTGCACC 481 |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 435 ACAACAATCTTATTGATGAATTGATCACTCATGGAATCCAGCCACATGTTACATTGCACC 494 Query 482 ACTTTGATCTTCCACAAGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 541 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 ACTTTGATCTCCCACAGGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 554 Query 542 TGAGAGGCTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 601 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 555 TGAGAGACTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 614 Query 602 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGATTAA 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 615 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGAATAA 674 Query 662 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAATGGAAACTCTTCCA 721 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 675 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAAAGGAAACTCTTCCA 734 Query 722 CTGAGCCTTACATTGCCGTACACAACATGTTGCTTGCGCATGCTTCTGCAACAAACTTAT 781 ||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||| Sbjct 735 TTGAGCCTTACATTGCCGTACACAACATGTTGCTCGCACACGCTTCTGCAACAATCTTAT 794 Query 782 ACAAGCAACAATACAAG-TTC 801 |||||||||| |||||| ||| Sbjct 795 ACAAGCAACAGTACAAGGTTC 815 Score = 512 bits (277), Expect = 3e-144 Identities = 323/345 (94%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 793 TACA-AGTTCAAGCAACATGGATCAGTAGGCATTAGCGTATACACATACGGTGTTGTCCC 851 |||| ||| ||||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct 874 TACACAGTACAAGCAACATGGATCAGTAGGCATTAGCGTATACACATATGGAGCTGTCCC 933 Query 852 TTTAACTAACTCTG-GAGAGGATAAGCAGGCAACTGCTAGAGTAAATGACTTCTATATTG 910 |||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||| Sbjct 934 TTTAACTAACTCTGTGA-AGGATAAGCAGGCAACAGCTAGAGTGAATGACTTCTATATTG 992 Query 911 GTTGGATTTTACATCCGTTGGTGTTTGGCGATTATCCTGAGAGGATGAAGACCAATGTTG 970 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 993 GTTGGATTTTACATCCGTTGGTGTTTGGTGATTATCCTGAGACGATGAAGACCAATGTTG 1052 Query 971 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGGACAAGTTAAGGGCGCATTTGATT 1030 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1053 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGAACAAGTTAAAGGCGCATTTGATT 1112 Query 1031 TCTTTGGAGTGATAAATTACATGGCACTTTACGTCAAGGACAACTCTTCCTCTCTGAAAC 1090 || |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 1113 TCGTTGGAGTGATAAATTACATGGCGCTTTATGTCAAAGACAACTCTTCCTCTCTGAAAC 1172 Query 1091 CAAATGTCCAGGATTTCACCACAGACATGGCCGTGGAAATGACCT 1135 | ||| |||||||||||| |||||| || |||||||||||||||| Sbjct 1173 CTAATCTCCAGGATTTCAACACAGATATAGCCGTGGAAATGACCT 1217 Score = 440 bits (238), Expect = 2e-122 Identities = 305/335 (91%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1141 ATGACTCCTCACAGGTCATCACTTGAGGACACAACGAGGGTTAAGTATCTGAGCTCATAC 1200 |||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| ||| Sbjct 1340 ATGACTCCTCACAGCTCATCACTTGTGGACACAACAAGGGTGAAGTATCTGAGCTCGTAC 1399 Query 1201 ATTGAAGCAGTGCTTCATTCA---ATCAGGAAAGGATCGAACGTAAAAGGGTATTTTCAG 1257 ||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 1400 ATTAAAGCAGTGCTTCATTCACTCAGCAGGAAAGGATCGGACGTAAAAGGGTATTTTCAG 1459 Query 1258 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGCTACGAGAAGAGCTTTGGATTATTT 1317 ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1460 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGGTACGAGAGGAGCTTTGGATTATTG 1519 Query 1318 TACGTGAACTTCAAGGATCCTTATCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1377 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1520 TACGTGGACTTCAAGGATCCTTCTCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1579 Query 1378 TCTTCCTTCCTCATGGGAACACTGCACCATCCATCAGACCATCACATGCTTCATCTTGAT 1437 ||||||||||||| |||||||||||||||||||||| | | |||||| ||||||| Sbjct 1580 TCTTCCTTCCTCAAGGGAACACTGCACCATCCATCA-----T-A--TGCTTCGTCTTGAT 1631 Query 1438 CATTTGACTACTTCAATGTTTATAATGCTTAGTTG 1472 ||||||| | ||||||| |||||||||||||||| Sbjct 1632 CATTTGA-T--TTCAATGGTTATAATGCTTAGTTG 1663 Score = 183 bits (99), Expect = 3e-45 Identities = 107/111 (96%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63 CTTCCCTCTAGACTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 122 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 CTTCCCTCCAGGCTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 213 Query 123 TGAAGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCACGCCGG 173 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 214 TGACGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCATGCCGG 264 Score = 99.0 bits (53), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 1 ATGAAGTTCTTGAGCAATAGTCTCATGCTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 60 |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 65 ATGAAGTTATTGAGCAATAGTCTAATGTTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 124 Query 61 GTCTTC 66 || ||| Sbjct 125 GT-TTC 129 > AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:22221677-22224257 REVERSE LENGTH=1570 Length=1570 Score = 167 bits (90), Expect = 3e-40 Identities = 396/538 (74%), Gaps = 43/538 (8%) Strand=Plus/Plus Query 281 CATGTGACCAGTATCACAAATACAAGGAAGATGTGAAGCTCATGGCAGACA-TGGGATTG 339 ||||||| |||||||||||||||||||||||||||| | |||| |||| | || Sbjct 221 CATGTGATGGGTATCACAAATACAAGGAAGATGTGAAGTTGATGGTGGACACTAAC-TTA 279 Query 340 GAGGCTTACAGATTCTCCATATCCTGGTCAAGGCTTTTACC-AAGTGGAAGAGGACCAAT 398 || |||| |||||||||||| || ||||| ||||| |||| || | ||||||| || | Sbjct 280 GATGCTTTCAGATTCTCCATCTCTTGGTCTAGGCTAATACCTAA-TAGAAGAGGCCCTGT 338 Query 399 TAATGTCAAGGGGCTACAATACTACAACAGTCTTATTGATGAATT-G-ATCGCTCATGGA 456 ||| ||||| || || | |||||| | |||||| | ||||| | | | |||||| Sbjct 339 TAACCAAAAGGGTCTTCAGTTCTACAAGAATCTTATCCAAGAATTAGTAAA-C-CATGGA 396 Query 457 ATCCAGCCACACGTTACATTGCACCACTTTGATCTTCCACAAGC-CTTAGAAGATGAGTA 515 || | ||| | |||||| ||||||||||||||| ||| ||| ||| || || || || Sbjct 397 ATTGAACCATATGTTACACTGCACCACTTTGATCATCCTCAATATCTT-GAGGACGAATA 455 Query 516 TGGAGGTTGGCTCAGCCA-A-GAAATCGT-GAGAGGCTTCACAGCTTATGCAGATACTTG 572 || ||| ||||||| ||| | || |||| || || ||| || |||||||||||| ||| Sbjct 456 TGAAGGATGGCTCAACCACATGA--TCGTCGA-AGACTTTACTGCTTATGCAGATGTTTG 512 Query 573 CTTCA-AGGAGTTTGGAGATAGAGTGTCACATT--GGACTACTATAAACGAGGTCAATGT 629 ||||| || |||||||| | | ||||| ||| |||| || || ||||||| |||| | Sbjct 513 CTTCAGAG-AGTTTGGAAACC-A-TGTCAAATTCTGGACCACGATCAACGAGGGCAATAT 569 Query 630 GTT-TGCCCTTGGAGGGTATGACCA-GGG-ATTAACACCGCCTGCTCGATGCTCTCC-T- 684 || | | ||||||| || || | ||| ||| ||||||||| ||| || | ||| | Sbjct 570 ATTCT-CTATTGGAGGTTACAACGATGGGGATT--CACCGCCTGGTCGTTG-T-TCCATA 624 Query 685 CCATTTGGACTTAATTG-T-ACCAATGGAAACTCTTCCACTGAGCCTTACATTGCCGTAC 742 ||| || | || || | | | |||| |||||||||||| || || |||| | | Sbjct 625 CCA---GGCCAAAACTGCTTATTAG-GGAA-CTCTTCCACTGAACCATATATTGTAGGCC 679 Query 743 ACAACATGTTGCTTGCGCATGCTTCTGCAACAA-ACTTATACAAGCAACAAT-ACAAG 798 | || ||||||||||||| || |||| ||| ||| ||| |||||| ||| ||||| Sbjct 680 ATAATTTGTTGCTTGCGCACGCCTCTGTTTCAAGACT-ATATAAGCAA-AATTACAAG 735 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73091993520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5