BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910021
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03590.1 | Symbols: | Protein phosphatase 2C family protein... 2298 0.0
> AT1G03590.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:894254-897518 REVERSE LENGTH=2003
Length=2003
Score = 2298 bits (1244), Expect = 0.0
Identities = 1334/1379 (97%), Gaps = 0/1379 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGGTTGTATCTCTAAGAGTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCGTGT 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 389 ATGGGAGGTTGTATCTCTAAGACTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCATGT 448
Query 61 CTCGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATCGTT 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 449 CTTGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATGGTT 508
Query 121 TCGCTTCATAACTTAGTTTCTATACCGAATCGGATCATCGGTAACGGAAAGAGCAGGAGT 180
|| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||
Sbjct 509 TCACTTCATAACTTGGTTTCTATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGT 568
Query 181 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 628
Query 241 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCCCAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 629 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCAT 688
Query 301 GGTCATCTTGTTGCTCGTAAAGTGAGGGATTCATTGCCTGTAAAGTTGCTGTCTCTCCTG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 689 GGTCATCTTGTTGCTCGTAAAGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTG 748
Query 361 AATTCCATTAAGTCGAAGCAAAATGGATCCACAGGAACTCGTACAAGCAAATCCGATAGC 420
||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 749 AATTCCATTAAGTCGAAGCAAAATGGACCCATAGGAACTCGTGCAAGCAAATCCGATAGC 808
Query 421 CTAGAAGCTGAGAAGGAAGAATCTACTGAGGAGCATAAATTAAATTTCTTATGGGAGGAA 480
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 809 CTAGAAGCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGGAGGAA 868
Query 481 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 928
Query 541 TGCTTCTGCAGTGGCTGCACGGCTGTTACAATCATTAAGCAGGGGTCAAATCTATTCATG 600
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 929 TGCTTCTGCAGTGGCTGCACAGCTGTTACAATCATTAAGCAGGGATCAAATCTATACATG 988
Query 601 GGAAACATTGGGGATTCTCGGGCGATACTTGGATCCAAAGACATCAACGATTCGATGGTT 660
|| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 989 GGTAACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATT 1048
Query 661 GCAGTTCAGCTAACAGTTGACTTAAAGCCTGACTTACCAAGGGAAGCTGAGAGGATCAAA 720
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1049 GCAGTTCAGCTAACAGTAGACTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAA 1108
Query 721 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 1168
Query 781 CCATTTGATAATGCTCCTGGATTAGCTATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1169 CCATTTGATAATGCTCCTGGATTAGCCATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 1228
Query 841 GACTACGGTGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 900
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GACTATGGAGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 1288
Query 901 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTGGTTGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1289 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTGAA 1348
Query 961 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGACTCGTGGTGGATTCAGCTGTA 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1349 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGGCTCGTGGTGGATTCAGCTGTA 1408
Query 1021 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1468
Query 1081 TTTCTAGACGGCAGAATGGACTCAGAGTCATCGGATAACGAAGAACAATGCTTCTCTTCG 1140
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1469 TTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTCTTCG 1528
Query 1141 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAC 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAT 1588
Query 1201 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTACGGTAATGTGATTGCA 1260
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1589 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGATTGCA 1648
Query 1261 GAGACTGATAATGCAGAGAAGGAGAAAACGACGGTAGGAGAACAGAACTGGTCAGGACTA 1320
||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1649 GAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGGGACTA 1708
Query 1321 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGAAACC 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1709 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGGAACC 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5