BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910406
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1 |... 370 2e-101
> AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1
| chr1:2269893-2274820 FORWARD LENGTH=3418
Length=3418
Score = 370 bits (200), Expect = 2e-101
Identities = 512/660 (78%), Gaps = 32/660 (5%)
Strand=Plus/Plus
Query 396 GCTCCCACTTTGGATTGATAGAATGTCAAGCCTTGAGTATCTATACATGAGGGGAAATCA 455
||| ||||||||||||| ||| || ||||| ||| || ||||||||||| || |||||
Sbjct 1995 GCTTCCACTTTGGATTGGTAGGATATCAAGGCTTTCCTACCTATACATGAGTGGTAATCA 2054
Query 456 GCTCAACGGTCATTTCCC-TCGCCAGCTACAGAAT-CTAAAGCTTAAGGTTATAGACATC 513
||| || |||| |||||| | | | | ||||| | || | || ||||||| ||||||
Sbjct 2055 GCTAAAAGGTCCTTTCCCTTTTCTA-CGACAGAGTCCT-TGGGTTGAGGTTATGGACATC 2112
Query 514 TCACATAATAGCTTCTTTGGTTCTCTACCAAGAAATGTTG-AGTTTCCAAT-TCTGAGAG 571
||||| |||||||||| |||||| ||||||| |||| || | ||||| || ||| ||||
Sbjct 2113 TCACACAATAGCTTCTCTGGTTCGATACCAAGGAATG-TGAATTTTCC-ATCTCTCAGAG 2170
Query 572 AGTTAAGACTACAGAACAATGAGTTTATTGGCTCAATTCC-AGACGCTTTGTTCGAGGCT 630
| |||||||||| ||||||||||||| || | | |||| || ||| ||| |||||
Sbjct 2171 AACTAAGACTACAAAACAATGAGTTTACGGGTTTAGTTCCGGGA-AATTTATTCAAGGCT 2229
Query 631 GAGCTACTGGAGGTGATTGATATGCGGAACAACAATTTTTCT-GATATGGTTCTGAATAA 689
| | | | || ||| ||||| |||||||||||||||||||| || | | | ||||| |
Sbjct 2230 GCGGGATTAGAAGTGCTTGATTTGCGGAACAACAATTTTTCTGGA-AAGATACTGAACAC 2288
Query 690 TGTTG-CCAAGGCATCTAATTTAGGTGTTCTTCTTCTACGGAGTAACAG-TTATGAAAGT 747
| ||| || || ||||||| ||| || ||||||||||||||| |||||| || | ||| |
Sbjct 2289 TATTGACC-AGACATCTAAGTTACGTATTCTTCTTCTACGGAATAACAGCTT-TCAAACT 2346
Query 748 CACATCCCTGAGAAACTATGTCAGCTAAGTGAAGTTGGTATCTTGGATTTATCTCAGAAT 807
| ||||||| |||| ||||||||||||||||||||||| | || || || ||||| |||
Sbjct 2347 TATATCCCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTGTTAGACTTGTCTCACAAT 2406
Query 808 AAATTCAAAGGTGTTATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAAAAAAGTAT 867
|||||| ||| |||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2407 CAATTCAGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAAT 2466
Query 868 GACAGCAACATGTCATTTGATCCAG-TGGAAGGCTTCTCAAA-AGTTTCATTCTCGCAA- 924
||| | | ||||||| ||| | ||| | | ||||||| | | || |||||| || |
Sbjct 2467 GACCGTACCATGTCACTTGTTGCAGATTTT-GACTTCTCATACA-TTACATTCTTGCCAC 2524
Query 925 AGTTGG-AGTTATACATCAGCTATC--AACCTTG-ATGATGATTTC-GCGTATGGTGCTC 979
| ||| | | || |||| | ||| ||| ||| |||||| | || | | ||||| ||
Sbjct 2525 A-TTGTCAAT-ATGGATCA-C-ATCTTAAC-TTGGATGATGGTGTCAG-GAATGGTTATC 2578
Query 980 AACGTACACCAGCAATCATAGTGGATTTTTTAACGAAAAGAAGATATGAAGCATATCAAG 1039
||| | |||||||| | |||||||||||||||||||||| |||||||| || |||||||
Sbjct 2579 AACCAAAACCAGCAACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAG 2638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5