BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg910527 Length=1356 Score E Sequences producing significant alignments: (Bits) Value AT1G08230.2 | Symbols: | Transmembrane amino acid transporter ... 1989 0.0 > AT1G08230.2 | Symbols: | Transmembrane amino acid transporter family protein | chr1:2583654-2586744 REVERSE LENGTH=1461 Length=1461 Score = 1989 bits (1077), Expect = 0.0 Identities = 1269/1362 (93%), Gaps = 12/1362 (1%) Strand=Plus/Plus Query 1 ATGGGTGGGGAAGGGATATCATCAGGAGATATAGAAAAAAGAGGGGAAG-A-T-GTTGAC 57 |||||||| ||| || | |||||||||| ||||||||||||||||| | | ||||| Sbjct 45 ATGGGTGGAGAA--GAGA-GATCAGGAGATGGAGAAAAAAGAGGGGAAGAAGTAGTTGAT 101 Query 58 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACGTGGTGGCACTGCGGATTCCACTTG 117 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 102 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACATGGTGGCACTGCGGATTCCACTTG 161 Query 118 ACGACGTCTATAGTGGCGCCGGCGCTACTGAGTCTACCGTACGCTTTCAAGTTCTTAGGA 177 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 162 ACGACGTCTATAGTGGCGCCTGCGCTACTGAGTCTACCGTACGCCTTCAAGTTCTTAGGA 221 Query 178 TGGGTTGCCGGAATATCCTGTCTGGTGGGAGGAGCAGCCGTCACTTTCTACTCGTACACC 237 |||| |||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 222 TGGGCTGCCGGGATATCTTGTCTGGTCGGAGGAGCAGCCGTTACTTTCTACTCGTACACT 281 Query 238 CTTCTTTCT-TTAACACTCGAACACCACGCTTCCCTCGGCCACCGTTACCTCCGCTTCCG 296 ||||||||| || || ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 282 CTTCTTTCTCTT-ACTCTCGAACACCACGCTTCTCTCGGCAACCGTTACCTCCGCTTCCG 340 Query 297 TGACATGGCTCACCACATCCTCGGTCCGAAATGGGGGAGGTACTACGTTGGACCAATACA 356 |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 341 TGACATGGCTCATCACATCCTCAGTCCGAAATGGGGAAGGTACTACGTTGGACCAATACA 400 Query 357 AATGGCGGTGTGCTATGGTGTGGTTATTGCGAATGCGCTCTTGGGAGGGCAATGCCTTAA 416 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 401 AATGGCGGTGTGCTATGGTGTGGTTATTGCCAATGCGCTCTTGGGAGGGCAATGCCTAAA 460 Query 417 GGCAATGTATTTGGTAACGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 476 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 461 GGCAATGTACTTGGTAGTGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 520 Query 477 TTTTGGATGCTTACTCTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 536 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 TTTTGGATGCTTACTTTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 580 Query 537 CAACTCATTTTCTCTGCTCCTATGCCTGCTCTATAGTGCTTCCGCCGCAGCTGCATCGAT 596 ||||||| | ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || Sbjct 581 CAACTCACTGTCTCTCCTCCTCTGCCTCCTCTACAGTGCTTCTGCCGCTGCTGCATCCAT 640 Query 597 CTACATTGGAAAAAG-ATCAAACGCACCAGAGAAGGACTATACTATAGTTGGTGA-CCAA 654 ||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| || | Sbjct 641 CTACATTGG-AAAAGAACCAAATGCACCAGAGAAGGACTATACTATAGTTGGTGATCC-A 698 Query 655 GAAACTAAAGTGTTTGGAATCTTCAATGCTATGGCTATTATTGCCACTACATACGGCAAC 714 ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 699 GAAACTAGAGTGTTTGGAATCTTTAATGCTATGGCTATTATTGCTACTACATACGGCAAT 758 Query 715 GGCATTATACCCGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 774 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 GGCATTATACCTGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 818 Query 775 GGGTTGTGTATGTGTTACCTTGTAGTGATAGTGACATATTTCACTGTAGCAATCACCGGA 834 |||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||| ||| Sbjct 819 GGGTTGTGTATGTGTTACCTTGTAGTAATAATGACATTTTTCACAGTAGCCATCACAGGA 878 Query 835 TATTGGGCATTTGGTAACAAAGCCAATGGATTTATATTCACCAATTTCTTAAATACCGAG 894 ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| ||||| Sbjct 879 TATTGGGCATTCGGTAAAAAAGCCAATGGACTTATCTTCACCAATTTCTTAAATGCCGAG 938 Query 895 ACAGACCATTACTTAGTTCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACCGTTCTT 954 ||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||| Sbjct 939 ACAAACCATTACTTTGTCCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACTGTCCTT 998 Query 955 CAACTTTCGGCTGTTGCTGTGGTATACCTACAGCCTATAAACGATATTTTGGAAAGTGTA 1014 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 999 CAACTTTCGGCCGTTGCTGTGGTATACCTACAACCTATAAACGATATTTTGGAAAGTGTG 1058 Query 1015 ATCAGCGATCCAACaaaaaaaGAGTTCTCTATCCGCAATGCCATCCCTCGACTAGTTGTG 1074 ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| Sbjct 1059 ATCAGCGATCCAACAAAGAAAGAATTCTCTATCCGCAATGTCATCCCTCGACTAGTTGTG 1118 Query 1075 CGTTCCCTCTTCGTCGTGGCGGCTACAATCATAGCAGCAATGCTTCCATTTTTTGGAGAT 1134 |||||||||||||||||| |||||||||| | || |||||||||||||||||||||||| Sbjct 1119 CGTTCCCTCTTCGTCGTGATGGCTACAATCGTTGCGGCAATGCTTCCATTTTTTGGAGAT 1178 Query 1135 GTAAACTCCTTGTTAGGTGCTTTCGGTTTTATACCTCTAGACTTCGTTCTACCTGTAGTG 1194 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1179 GTAAACTCCTTGTTAGGCGCTTTCGGTTTTATACCTCTAGACTTCGTTCTTCCTGTAGTT 1238 Query 1195 TTCTTCAATTTTACCTTCAAGCCATCTaaaaaaaGTTTCATTTTTTGGATCAACACTGTG 1254 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1239 TTCTTCAACTTTACTTTCAAGCCGTCTAAAAAAAGTTTCATTTTTTGGATCAACACTGTG 1298 Query 1255 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGAGTGCTATGGTAGCAGCAGTTAGACAGATT 1314 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| Sbjct 1299 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGATTGCTATGGTAGCGGCGGTTAGACAGATT 1358 Query 1315 ATAATCGATGCCAATACATATAAGTTGTTTGCGGATGTATAA 1356 ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1359 ATAATAGATGCCAATACGTATAAGTTGTTTGCGGATGTATAA 1400 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66766724850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5