BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910790
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2839 0.0
> AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3491281-3493737 REVERSE LENGTH=2073
Length=2073
Score = 2839 bits (1537), Expect = 0.0
Identities = 1663/1724 (96%), Gaps = 7/1724 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTGATTCAATCCTACGACGAAG-A-A-GAAGCCGTTGCTTCCTCGCCGGAATCT 57
||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||
Sbjct 73 ATGGATCTGATTCAATCCTACGAAGAAGAAGACGAAGCCGTTGCTTCCTCGCCGGAATCT 132
Query 58 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCGTTA 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 133 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCACTA 192
Query 118 GCTCTCACGGTGGCTAGCGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 177
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GCTCTCACGGTGGCTAACGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 252
Query 178 GTCGTCTTGTT-TAACCCAACCCATGAGCAGATGTGGGCTCCGAT-TTACGGCCCCGCGC 235
|||||||| || |||||| |||||||| ||| ||||||||||||| || |||||||||||
Sbjct 253 GTCGTCTT-TTATAACCCTACCCATGATCAGCTGTGGGCTCCGATGTT-CGGCCCCGCGC 310
Query 236 ATCCGTATGCTAAAGACGGGATCGCTCAAGGGATGCGTAATCACAAGCTAGGGTCTGTGG 295
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 311 ATCCGTATGCGAAAGACGGGATCGCTCAAGGGATGCGGAATCATAAGCTAGGTTCTGTGG 370
Query 296 AAGATGCTTCGATTGGATCATTTGGGTTTGATGAGCAGTACAATACGTTTCATAAGTACG 355
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 371 AAGATGCTTCGATTGGATCGTTTGGGTTTGAAGAGCAGTACCATACGTTTCATAAGTGCG 430
Query 356 GTTACGCGGCGGATCCGTCTGGGATGCATTACGTCGGCGATGTTGAGGCGTTGAAGCAGA 415
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct 431 GTTACGCGGCGGATCCGTCTGGGATGAACTACGTCGGCGATGTTGAGGCGTTTAAGAAGA 490
Query 416 ACGATGGTCTTTCGGTTTATAATATTCCTCagagtgagcagaagcggaggaagattgaga 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ACGATGGTCTTTCGGTTTTTAATATTCCTCAGAGTGAGCAGAAGCGGAGGAAGATTGAGA 550
Query 476 agaataaagaggagagggaaggggaagagaaaaaggaagagcttgagccggaagctgaga 535
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 551 GGAGCAAAGAGGAGAGGGAAGGGGAAGAGAAAAAGGAAGAGATTGAGCCGGAAGCTGAGA 610
Query 536 aTCCGGCGACGGAAGCTTGGCTTATGAAGAATAGGAAGAGTCCATGGTCGAGGAAGAAGG 595
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 611 ATCCGGAGACGGAAGCTTGGCTTAGGAAGAATAGGAAGAGTCCGTGGTCGAGGAAGAAGG 670
Query 596 AGTTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCACGCTAAGA 655
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 671 AGGTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCATGCCAAGA 730
Query 656 AGAAGGAAGAGAAAGGACAACAAGGTGAAGCCAAAGGGGAGCATTATGCGGATAAGAGTA 715
||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 731 AGAAGGAGGAGAAGGGACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTA 790
Query 716 CATTCCATGGCAAAGAGGAGAAAGATTACCAAGGAAGGTCTTGGATTGAGGCTCCAAAAG 775
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 791 CCTTCCATGGCAAAGAGGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCTCCTAAAG 850
Query 776 ATGCAAAAGCGAACAATGATCATTGTTACATTCCAAAACGTTTGGTTCATACATGGAGTG 835
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 851 ATGCTAAGGCGAACAATGATCATTGCTACATTCCAAAACGTTTGGTTCATACATGGAGTG 910
Query 836 GTCACACGAAAGGTGTTTCTGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 895
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGCACACGAAAGGTGTTTCCGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 970
Query 896 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 1030
Query 956 GGACTTACATGGGTCATGCCAAAGCTGTGAGGGATATTTGCTTTTCCAATGATGGGTCTA 1015
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1031 GGACTTACATGGGTCACGCCAAAGCTGTGAGGGATATTTGCTTCTCCAATGATGGGTCTA 1090
Query 1016 AGTTCTTAACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1075
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AATTCTTGACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1150
Query 1076 TTATATCGACTTTCTCTACTGGGAAGATTCCGTATGTGGTGAAGCTGAATCCGGATGATG 1135
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1151 TTATATCGACTTTCTCCACTGGGAAGATTCCGTATGTGGTTAAGCTGAATCCGGATGATG 1210
Query 1136 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATCA 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1211 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATTA 1270
Query 1196 ATACGGGGGAGATTACACAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1255
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 ATACGGGGGAGGTTACGCAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1330
Query 1256 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1390
Query 1316 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1450
Query 1376 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1510
Query 1436 TGATCTATAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1495
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TGATCTACAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1570
Query 1496 TTGTTGCCGGTTACGCATGCCAAGTTAACTTCTCCCCAGATGGACGGTTTGTAATGTCAG 1555
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1571 TTGTTGCCGGTTATGCATGCCAAGTTAACTTCTCGCCAGATGGACGGTTTGTAATGTCAG 1630
Query 1556 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1690
Query 1616 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1750
Query 1676 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1719
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5