BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911048 Length=462 Score E Sequences producing significant alignments: (Bits) Value AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:43... 676 0.0 > AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:4368760-4371293 REVERSE LENGTH=2229 Length=2229 Score = 676 bits (366), Expect = 0.0 Identities = 414/437 (95%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 1 ATGAATTATTTCCCAGACGAGGTCATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 377 ATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA 436 Query 61 GACAGGAACTCGATCTCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 GACAGGAACTCGATATCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG 496 Query 121 AAG-AACGTGTTCATCGGAAACTGCTACGCCATCAATCCAGAGAGATTAATCGGGAGGTT 179 ||| || ||||||||||||||||||||||| || || || ||||| || ||| ||||||| Sbjct 497 AAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGAGGTTGATCAGGAGGTT 555 Query 180 TCCATGTCTCAAATCCTTAACTCTTAAA-GGGAAGCCTCATTTCGCTGATTTCAACTTGG 238 |||||||||||||||||||||| ||||| |||||||||||||| || || |||||||||| Sbjct 556 TCCATGTCTCAAATCCTTAACT-TTAAAAGGGAAGCCTCATTTTGCAGACTTCAACTTGG 614 Query 239 TTCCTCATGAATGGGGAGGTTTCGTGCTTCCTTGGATTGAAGCTTTGGCTAGGAGCCGTG 298 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 615 TTCCTCATGAATGGGGAGGTTTCGTGCATCCTTGGATTGAAGCTTTGGCTAGAAGCCGTG 674 Query 299 TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTGGTAACAGATGAAAGCTTGGAGCTTC 358 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 675 TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGATGAAAGCTTGGACCTTC 734 Query 359 TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTCAGCTGTGAAAGGTTTACCA 418 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 735 TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTTACCA 794 Query 419 CTGACGGCTTAGCTTCC 435 |||| |||||||||||| Sbjct 795 CTGATGGCTTAGCTTCC 811 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22017274062 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5