BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911048

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:43...   676    0.0  


> AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:4368760-4371293 
REVERSE LENGTH=2229
Length=2229

 Score =  676 bits (366),  Expect = 0.0
 Identities = 414/437 (95%), Gaps = 4/437 (1%)
 Strand=Plus/Plus

Query  1    ATGAATTATTTCCCAGACGAGGTCATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA  60
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  377  ATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA  436

Query  61   GACAGGAACTCGATCTCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  437  GACAGGAACTCGATATCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG  496

Query  121  AAG-AACGTGTTCATCGGAAACTGCTACGCCATCAATCCAGAGAGATTAATCGGGAGGTT  179
            ||| || ||||||||||||||||||||||| || || || ||||| || ||| |||||||
Sbjct  497  AAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGAGGTTGATCAGGAGGTT  555

Query  180  TCCATGTCTCAAATCCTTAACTCTTAAA-GGGAAGCCTCATTTCGCTGATTTCAACTTGG  238
            |||||||||||||||||||||| ||||| |||||||||||||| || || ||||||||||
Sbjct  556  TCCATGTCTCAAATCCTTAACT-TTAAAAGGGAAGCCTCATTTTGCAGACTTCAACTTGG  614

Query  239  TTCCTCATGAATGGGGAGGTTTCGTGCTTCCTTGGATTGAAGCTTTGGCTAGGAGCCGTG  298
            ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct  615  TTCCTCATGAATGGGGAGGTTTCGTGCATCCTTGGATTGAAGCTTTGGCTAGAAGCCGTG  674

Query  299  TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTGGTAACAGATGAAAGCTTGGAGCTTC  358
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  675  TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGATGAAAGCTTGGACCTTC  734

Query  359  TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTCAGCTGTGAAAGGTTTACCA  418
            |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct  735  TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTTACCA  794

Query  419  CTGACGGCTTAGCTTCC  435
            |||| ||||||||||||
Sbjct  795  CTGATGGCTTAGCTTCC  811



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5