BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911052 Length=846 Score E Sequences producing significant alignments: (Bits) Value AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1312 0.0 > AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:4361551-4365331 REVERSE LENGTH=2673 Length=2673 Score = 1312 bits (710), Expect = 0.0 Identities = 813/860 (95%), Gaps = 18/860 (2%) Strand=Plus/Plus Query 2 TGGAATCATCTGAGATAGAAAATAACTCAATTCCAAC-GAGAT---G-TC-CT--CGGGA 53 |||||||||| |||||||||||||| ||||||||||| || || | || | || || Sbjct 1086 TGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCAGCTCAATAGCGAGA 1145 Query 54 --TCCTCTGAGGAGAAAACCGTTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 111 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1146 TGTCCTCTGAGGAGAAAACTATTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 1205 Query 112 TTTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGAAACCAC--A-ATTAGACCCGTCT 168 |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| Sbjct 1206 -TTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGAAACCACAAAGATTAGACCCGTCT 1264 Query 169 TCCG-TGGAGCCATCAGTTTC-AACCAAAGGACAACCGTTAATCGTGAACTATGAAGGCC 226 |||| | |||||||||||| | || || |||| |||||| | |||||||| ||||||||| Sbjct 1265 TCCGCT-GAGCCATCAGTTCCGAA-CATAGGAAAACCGTCAGTCGTGAACCATGAAGGCC 1322 Query 227 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 1382 Query 287 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 1442 Query 347 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATCGGATTTTTACCCTACCGGA 406 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1443 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATTGGATTTTTACCCTACCGGA 1502 Query 407 ACCTAGCAGCAAAATGGAAATTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 466 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1503 ACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 1562 Query 467 ATCCATCACTGTATCGACAAAACCTTGGGGTAATCGGAGGTCAAGATGTCACAAGTAAAG 526 ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1563 ATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTCACGAGTAAAT 1622 Query 527 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACATCGATCAACGGAGAAGTTT 586 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1623 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACAACGATCAACGGAGAAGTTT 1682 Query 587 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAAAAGCAGAAGTTCC 646 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1683 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAGAAGCAGAAGTTCC 1742 Query 647 TGTCATCTTTTGTTGGCCAGAAAATCAAAGTGAATGTTGTTATGGCTAATCGAAACTCAA 706 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1743 TGTCATCTTTTGTTGGTCAGAAAATCAAAGTGAATGTTGTTATGGCAAATCGAAATTCAA 1802 Query 707 GGAAGCTTATATTTTCGATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 766 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1803 GGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 1862 Query 767 ATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 826 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 CTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 1922 Query 827 ATTTTGGTATTTTTTGTGAG 846 ||||||||||||| |||||| Sbjct 1923 ATTTTGGTATTTTCTGTGAG 1942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41242234687 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5