BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911192 Length=831 Score E Sequences producing significant alignments: (Bits) Value AT1G13990.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 547 5e-155 > AT1G13990.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4794756-4796594 FORWARD LENGTH=1099 Length=1099 Score = 547 bits (296), Expect = 5e-155 Identities = 336/356 (94%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 476 ACAGTGAAGTGGAAAAGGAGCTTGGACTGTTGTTTCCTAGTAGGATCAGCAACCAGACAA 535 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 626 ACAGTGAAGTAGAAAAAGAGCTTGGACTGTTGTTCCCTAGTAGGATCAGCAACCAGACAA 685 Query 536 AACAGTCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTTC 595 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 686 AGCAGGCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTAC 745 Query 596 TGGTTTTCGAAGATGTGAATGAGGCTGTTCGATACTGTGACCTATTACAAGGTGGAGGAA 655 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | Sbjct 746 TGGTTTTCGAAGATGTGAATGAGGCTGTTAGATACTGTGACCTATTACAAGGGGGAGGGA 805 Query 656 AAGGGTGTGAAGGCGTCGCTGAGATTGAGGCCTCATCTGTTTTTGATCTTTGCCGGAAAA 715 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 806 AAGGGTGTGAAGGTGTCGCTGAGATTGAGGCCTCCTCTGTTTTTGATCTTTGTCGGAAAA 865 Query 716 CAAGGTCTCTGGCAGTTCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACACTGG 775 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 866 CAAGGTCTCTGGCAGTGCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACGCTGG 925 Query 776 AGCGTAATCTAGGATCCCGTAAGCGGTCTCTTGAGGACTTAAGGGATAGTAAATAG 831 | |||||||| |||||||| ||||| |||||||||||||| ||||||| ||||||| Sbjct 926 AACGTAATCTCGGATCCCGGAAGCGTTCTCTTGAGGACTTGAGGGATAATAAATAG 981 Score = 544 bits (294), Expect = 7e-154 Identities = 359/389 (92%), Gaps = 9/389 (2%) Strand=Plus/Plus Query 1 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTCCCTCCGACCACCGCAACTACA 60 |||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| Sbjct 55 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTTCCTCCGGCCACCACTACTACG 114 Query 61 ATCCCTGTTTCAACTTCAGGATCAGTGTTGATTCGTCTT-CTTCCCCACCGTTCTTCTT- 118 ||||| |||||||||||| |||||||||||||||||||| ||| | | ||||||||||| Sbjct 115 ATCCCCGTTTCAACTTCACGATCAGTGTTGATTCGTCTTCCTT-CACGCCGTTCTTCTTA 173 Query 119 CATTTTCCGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCGAGAAGAAGACACTTCG 178 | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 174 CCTTTT-CGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCTAGAAGAAGACACTTCG 232 Query 179 CTAGCTGTAAATCCACCGGCGGC---GGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 235 |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 233 TTAGCTGTAAATCGACCGGCGGCGGAGGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 292 Query 236 AAGAGAGCGAGGAAGTTGAGCGGGCGCTTCACTTGGACGGTACGATTCCTGGGACTTCCG 295 |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct 293 AAGAGAGCGAGGAAGTTGAGAAGGCGCTTCACTTGGATGGTACGATCCCTGGGACTTCCG 352 Query 296 ATGAGTTTGTAAGGCAAGTGTCGTCGCGTGCTTACGAGATGCGTCGGAAA-TTAGAGCAG 354 ||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||| Sbjct 353 ATGAGTTTGTAAGGCAAGTTTCGTCGCGTGCTTACGACATGCGTCGGAAACTT-GAGCAG 411 Query 355 ACGTTTGATTCCACCAGCTATGACGTGTT 383 |||||||||||||| |||||||||| ||| Sbjct 412 ACGTTTGATTCCACTAGCTATGACGAGTT 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40488722482 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5