BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911507
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase 2 ... 1507 0.0
AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ... 843 0.0
> AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase
2 | chr1:5829080-5831343 FORWARD LENGTH=1591
Length=1591
Score = 1507 bits (816), Expect = 0.0
Identities = 878/909 (97%), Gaps = 0/909 (0%)
Strand=Plus/Plus
Query 1 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 555 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGT 614
Query 61 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCA 674
Query 121 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 734
Query 181 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 735 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAA 794
Query 241 ACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCT 300
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 795 ACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCT 854
Query 301 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAG 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAG 914
Query 361 GTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGAT 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 915 GTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGAT 974
Query 421 GTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 480
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 1034
Query 481 AGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAGGTCGCAGAGCAAATGTAT 540
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1035 AGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAGGTCGCAGAGCAAATGTAT 1094
Query 541 CAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 1154
Query 601 CAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACA 660
|| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 1155 CAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACATAACG 1214
Query 661 GCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAG 720
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1215 GCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTCTGAG 1274
Query 721 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 1334
Query 781 AAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCGTTAAAGAATCTGAATTGT 840
||||||||||||||||| || |||||||||| ||| ||||||||||||||| ||||||||
Sbjct 1335 AAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCGTTAAAGAATTTGAATTGT 1394
Query 841 CTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAGG 900
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1395 CTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAATCTTGAAAGG 1454
Query 901 ATTGATTAG 909
|||||||||
Sbjct 1455 ATTGATTAG 1463
> AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase
1 | chr1:29535285-29537417 REVERSE LENGTH=1600
Length=1600
Score = 843 bits (456), Expect = 0.0
Identities = 770/921 (84%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 1 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 60
||||||||||| |||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 567 ATTGTTGGTGCGGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGT 626
Query 61 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGC 119
|| || || ||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 627 GGTAAAAGAATGAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGC 685
Query 120 TGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTC 178
||| |||||||||| ||| |||||| |||||||| || ||||||||| |||||||| |
Sbjct 686 AGGCCTAAAGGAACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATAC 744
Query 179 ACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAG 238
|||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 745 ACACTGCAAGCTTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGG 804
Query 239 AAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTG 298
|||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 805 AAACAGTTCATGAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTG 864
Query 299 CTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTC 358
||||||| ||||||||||||||||||||||| || || |||| ||||||||||| ||||
Sbjct 865 CTCAAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTC 924
Query 359 AGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTG 418
|||| |||||||| ||||||||||| ||||||||||| || || || ||||| || || |
Sbjct 925 AGGTGATCAAAGACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCG 984
Query 419 ATGTCGAGCTTGATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCT 477
| | |||| || || ||||| || ||| |||| |||||||||||| || ||||| |||
Sbjct 985 ACACCAAGCTCGACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCT 1043
Query 478 GCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAA 534
|| ||||||||||||||||| |||||||| | ||| || || || || | |||| |||
Sbjct 1044 GCGAGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAA 1100
Query 535 ATGTATC-AGTTCGGAAAGAATCTCGGTTTATCTTTTCA-AGTAGTTGATGACATTCTGG 592
||||| | |||| || |||||||||||| | ||||| || | |||||||||| ||| |||
Sbjct 1101 ATGTA-CGAGTTTGGGAAGAATCTCGGTCTCTCTTTCCAGA-TAGTTGATGATATTTTGG 1158
Query 593 ACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTA 652
| |||||||| || ||||||||| | ||||| || |||| | ||| || || |||||||
Sbjct 1159 ATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTA 1218
Query 653 ACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTG 712
|| ||||||| || ||||| ||||| || |||| ||||| |||||||||||||||||||
Sbjct 1219 ACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTG 1278
Query 713 AGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCG 772
|||| |||||||||||| | || || || ||||||||||||||| || | ||| | |
Sbjct 1279 AGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTG 1338
Query 773 GTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGA-G-CTTGCGT-TAAAGA 829
| ||||| |||| ||| ||||||||||||| |||||||| ||| | | || | ||||||
Sbjct 1339 GGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAGAAAGCTGATGAC--GC-TATAAAGA 1395
Query 830 ATCTGA-ATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTT 888
|||| | | ||||| || ||||||| ||||| |||||||| || ||||||||| ||| |
Sbjct 1396 ATCT-ACAGTGTCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTAT 1454
Query 889 AATCTTGAAAGGATTGATTAG 909
|| || ||||| |||||||||
Sbjct 1455 AACCTCGAAAGAATTGATTAG 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5