BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911526
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 134 2e-30
> AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type)
family protein (TAIR:AT2G07760.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826
REVERSE LENGTH=1707
Length=1707
Score = 134 bits (72), Expect = 2e-30
Identities = 119/141 (84%), Gaps = 6/141 (4%)
Strand=Plus/Plus
Query 606 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 664
||||||| | || ||| ||||||||||||||||||||||| | | ||| || ||||||||
Sbjct 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402
Query 665 CGGCTTCAGTTGTCCAATCTAGTGCTAAT--TT-TTTC-GCAAAGCTTCTAGTTCAAATA 720
| || ||| ||| |||||||| ||||| || |||| |||||||||||||||||||||
Sbjct 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462
Query 721 AATTTGCAGTGCTCGATTTAG 741
||||||| ||||| |||||||
Sbjct 1463 AATTTGCGGTGCTGGATTTAG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5