BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912129
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22740.1 | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPa... 981 0.0
AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3... 241 7e-63
> AT1G22740.1 | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPase
homolog G3B | chr1:8049100-8050708 FORWARD LENGTH=973
Length=973
Score = 981 bits (531), Expect = 0.0
Identities = 591/619 (95%), Gaps = 8/619 (1%)
Strand=Plus/Plus
Query 1 ATGTCGATGCGAAGACGAACTTTACTCAAAGTTATCATTCTTGGAGACAGCGGGGTTGGC 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 148 ATGTCGACGCGAAGACGAACTTTACTCAAAGTTATAATTCTTGGAGACAGCGGGGTTGGC 207
Query 61 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAGCAGTACAAAGCTACG 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 208 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAACAGTACAAAGCTACG 267
Query 121 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTACAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 268 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTGCAA 327
Query 181 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 387
Query 241 GCAGATTGTTGTGTTCTTGTCTATGATGTCAATTACTTGAAGTCGTTTGATTCTCTCGAC 300
||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 388 GCAGATTGTTGTGTTCTTGTCTATGATGTGAATCACTTGAAGTCATTTGAATCTCTCGAC 447
Query 301 AATTGGCACGACGAGTTTCTTAAACGGGCTAGTCCACGTGATCCAATGGCATTCCCTTTT 360
||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 448 AATTGGCACAACGAGTTTCTTACACGGGCTAGTCCACGTGACCCAATGGCATTCCCTTTT 507
Query 361 ATACTTCTCGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGATAAG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 508 ATACTTCTTGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGAGAAG 567
Query 421 AAAGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AAGGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 627
Query 481 GA-GAATTACAATGTCGATGACTCTTTCTTGTGCATCACAAAACTTGCCCTTGCCAATGA 539
|| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 628 GAAGA-TTACAATGTCGATGACTCCTTCTTGTGCATCACAAAACTTGCCCTTGCAAATGA 686
Query 540 ACGCGACCAAGATATATATTTCCAAGGGATTCCAGAGACTGGTTCGGAGTCTGAACAAAG 599
|||||||||||||||||||||||| | ||||| |||||||||| | |||| |||||
Sbjct 687 ACGCGACCAAGATATATATTTCCA-G-----CCAGATACTGGTTCGGTGCCTGAGCAAAG 740
Query 600 AGGAGGTTGTGCTTGCTGA 618
|||||||||||||||||||
Sbjct 741 AGGAGGTTGTGCTTGCTGA 759
> AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog
G3D | chr1:19467969-19469586 REVERSE LENGTH=939
Length=939
Score = 241 bits (130), Expect = 7e-63
Identities = 380/495 (77%), Gaps = 40/495 (8%)
Strand=Plus/Plus
Query 25 CTCAAAGTTATCATTCTTGGAGACAGCGGGGTTGGCAAAACATCGTTGATGAATCAATAT 84
||||| ||||||||||| || || ||||| ||||| || || |||||||||||||| | |
Sbjct 162 CTCAAGGTTATCATTCTCGGTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTT 221
Query 85 GTGAAT-AACAAGTTTAGTCAGCAGTACAAAGCTACGATCGGAGCTGATTTTGTCACTAA 143
|||||| | ||||||||| | ||||| ||||||||||| ||||| |||||| | |||||
Sbjct 222 GTGAATCGA-AAGTTTAGTAATCAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTAA 280
Query 144 GGAGCTTCAAATTGATGACAGGCT-TGTCACATTACAAATATGGGACACTGCTGGGCAAG 202
||| ||||||| |||||||| | | |||| ||||| || ||||| |||||||| ||||
Sbjct 281 AGAGGTTCAAATAGATGACAGAATCT-TCACTTTACAGATTTGGGATACTGCTGGACAAG 339
Query 203 AGAGGTTTCAAAGTCTT-GGTGTTGC-TTTCTATAGAGGTGCAGATTGTTGTGTTCTTGT 260
| || ||||||||| || || ||||| ||| || |||| || |||||||||||||||||
Sbjct 340 AAAGATTTCAAAGT-TTGGGAGTTGCGTTT-TACCGAGGAGCGGATTGTTGTGTTCTTGT 397
Query 261 CTATGATGTCAAT-T-ACTTGAAGTCGTTTGATTCTCTCGACAATTGGCACG-ACGAGTT 317
||||||||||||| | | | ||| || |||||| ||| | || ||| | | | |||||
Sbjct 398 CTATGATGTCAATGTTA-T-GAAATCTTTTGATAATCTTAATAACTGG-AGGGAAGAGTT 454
Query 318 TCTTAAA-CGGGCTAGTCCA-CGTGATCC--AATGGCATTCCCTTT-TATACT-TCTCGG 371
||| | | ||||||||| | ||||| || | |||| ||| | | | | | ||
Sbjct 455 -CTTGATTCAGGCTAGTCCTTCA-GATCCTGAAAA-CTTTCCATTTGT-TG-TGT-TGGG 508
Query 372 TAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGATAAGAAAG-CTAGAG 430
|| ||| |||| ||||||| ||||| ||| ||||||| ||||| || |||| | | ||
Sbjct 509 GAACAAGACTGATGTTGATGGTGGAAAGAGCAGAGTGGTTTCTGAGAA-AAAGGCAA-AG 566
Query 431 A-ATGGTGTGC-TGAAAAGGGAAACATAGTC-T-A-TTTCGAGACATCGGCTAAAGA-GA 484
||||||||| | ||||| |||||| || | | ||| ||||| || || ||||| |
Sbjct 567 GCATGGTGTGCATCTAAAGG-AAACAT--TCCTTACTTT-GAGACTTCCGCCAAAGAAGG 622
Query 485 ATTACAATGTCGATG 499
||| |||||| ||||
Sbjct 623 ATT-CAATGTAGATG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5