BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912233
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23730.1 | Symbols: ATBCA3, BCA3 | beta carbonic anhydrase 3... 1225 0.0
> AT1G23730.1 | Symbols: ATBCA3, BCA3 | beta carbonic anhydrase
3 | chr1:8395557-8398144 FORWARD LENGTH=996
Length=996
Score = 1225 bits (663), Expect = 0.0
Identities = 739/777 (95%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACAGAGTCGTACGAAGATGCCATTAAAAGACTAGGAGAGCTTCTCAGTAAGAAA 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 90 ATGTCGACAGAGTCGTACGAAGACGCCATTAAAAGACTCGGAGAGCTTCTCAGTAAGAAA 149
Query 61 TCGGATCTCGGGAACGTGGCAGCTGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 150 TCGGATCTCGGGAACGTGGCAGCCGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 209
Query 121 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTATCCATTTCAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 210 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTCTCCATTTCAAG 269
Query 181 ACTAATAATTATGAGAAGAATCCTACTTTGCACAATGCACTTGCCAAGAGCCAGAGCCCC 240
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 270 ACTAATAATTATGAGAAGAATCCTACTTTGTACAATTCACTTGCCAAGAGCCAGACCCCC 329
Query 241 AAGTTTCTGGTGTTTGCTTGTGCGGATTCACGAGTTAGCCCTTCACACATCTTGAACTTC 300
|||||| ||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 330 AAGTTTTTGGTGTTTGCTTGTGCGGATTCACGAGTTAGTCCATCTCACATCTTGAATTTC 389
Query 301 CAACTTGGGGAAGCCTTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CAACTTGGGGAAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 449
Query 361 ACAAAACACTCTAATGTTGGTGCCGCCCTTGAATATCCAATTACAGTCCTTAACGTGGAG 420
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 450 ACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAACGTGGAG 509
Query 421 AACATTCTGGTGATTGGTCACAGCTGTTGTGGTGGAATAAAGGGACTTATGGCCATTGAG 480
|||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 510 AACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAA 569
Query 481 GATGATACAGCTCCCACTAAGACAGAGTTCATAGAAAACTGGATCCAAATCTGTGCACCG 540
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 570 GATAATACAGCTCCCACTAAGACCGAGTTCATAGAAAACTGGATCCAGATCTGTGCACCG 629
Query 541 GCCAAGAACAGGATCAAGCAGGAATGCAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 600
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 630 GCCAAGAACAGGATCAAGCAGGATTGTAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 689
Query 601 TGTGAGAAGGAAGCTGTGAACGTGTCCTTGGGGAATCTGTTGTCTTACCCATTCGTGAGA 660
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 690 TGTGAGAAGGAAGCCGTGAACGTGTCCTTGGGGAATCTTTTGTCTTACCCATTCGTGAGA 749
Query 661 GATAGAGTAGTGAAGAACAAGCTTTCCATAAGAGGAGCTCACTACGATTTCGTGAAAGGA 720
|| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 750 GAAAGAGTGGTGAAGAACAAGCTTGCCATAAGAGGAGCTCACTATGATTTCGTAAAAGGA 809
Query 721 ACTTTTGATCTTTGGGAGCTCGACTTCAAGACCACCCCTGCCTTTGCTTTGTCTTAA 777
|| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct 810 ACGTTTGATCTTTGGGAACTTGACTTCAAGACTACCCCTGCCTTTGCCTTGTCTTAA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5