BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912355
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24020.1 | Symbols: MLP423 | MLP-like protein 423 | chr1:850... 444 2e-124
> AT1G24020.1 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500451-8501520
REVERSE LENGTH=732
Length=732
Score = 444 bits (240), Expect = 2e-124
Identities = 267/280 (95%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1 TCTCCACTGGTGAAGATGTTGGCTGAGAGGATTGAAGCAGTGGATTTGGAGAACAAAAGC 60
||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||
Sbjct 252 TCTCCACTGGTGAAGATATCGGCGGAGAGGATCGAAGCAGTGGATTTGGAGAACAAAAGC 311
Query 61 ATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAACTTTCAAAGGAACC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 312 ATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAACCTTCAAAGGAACC 371
Query 121 ATCACCTGT-ATTCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCCGGTGAGTTTGAGAA 179
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 372 ATCACC-GTTATCCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCTGGTGAGTTTGAGAA 430
Query 180 GACCGCCCATGAGATCGATGACCCACACGTCATCAAGGACTTTGCTGTCAAGAACTTCAA 239
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 431 GACCGCCCATGAGATCGATGATCCACATGTCATCAAGGACTTTGCTGTCAAGAACTTCAA 490
Query 240 AGAGATAGATGAGTATCTCCTTAAGCAATCTAGTGCCTAA 279
|||||||||||||||||| ||||||||| |||||||||||
Sbjct 491 AGAGATAGATGAGTATCTTCTTAAGCAAACTAGTGCCTAA 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12818275995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5