BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912447
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25682.1 | Symbols: | Family of unknown function (DUF572) ... 1498 0.0
AT1G25988.1 | Symbols: | Family of unknown function (DUF572) ... 399 2e-110
> AT1G25682.1 | Symbols: | Family of unknown function (DUF572)
| chr1:9002285-9004646 REVERSE LENGTH=1244
Length=1244
Score = 1498 bits (811), Expect = 0.0
Identities = 900/942 (96%), Gaps = 9/942 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACTCTGTCAGCTGCCAGGGCGGATAACTTTTACTATCCCCCAGAATGGACTCCA 60
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 97 ATGTCGACTCTATCAGCTGCCAGGGCAGATAACTTTTACTATCCTCCAGAATGGACTCCG 156
Query 61 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTGAGAGAGAGGGCAAAGAAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 157 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTCAGAGAGAGGGCAAAGAAA 216
Query 121 ATTGGCGAAGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATTGGCGAGGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 276
Query 181 TGCAATTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGaaaaaaaGCAAGTTGGGAAC 240
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 277 TGTAGTTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGAAAAGAAGCAAGTTGGCAAC 336
Query 241 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 396
Query 301 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTTATCACTAGTGGTGCCCAGAAGAAG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 397 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTAATCACTAGTGGTGCCCAGAAGAAG 456
Query 361 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 516
Query 421 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAAAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 517 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAGAAG 576
Query 481 AAAGCAGCAGAACCGCTTTTGGTCCGTCTCCAGCGAGTCTCAGATGCAAGACATGCTGAT 540
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 577 AAAGCAGCTGAACCGCTTTTGGTCCGTCTTCAGCGAGTCTCAGATGCAAGACATGCTGAT 636
Query 541 GATTACTCCCTAAACAAAGCTCTGCGTGCACAACTTAGGGGACACAGAAAACGTGTAGCA 600
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 637 GATTACTCCCTAAACAAAGCTCTACGTGCACAACTTAGGCGACACAGAAAACGTGTAGCA 696
Query 601 GAAGAAGAGGCTGCTTCAAGGAAGTTAGGCTTGGGGATAAGACTTCTTCCAAAGAGTGAA 660
|| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 697 GAGGAAGAGACTGCTTCAAGGAAGCTAGGCTTGGGGATAAGACTGCTTCCAAAGAGTGAA 756
Query 661 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGACCAAGTTTGATAAGAATCGAAAG 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 757 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGAGCAAGTTTGATAAGAATCGAAAG 816
Query 721 GACAAACGAGCACTAATCCATGCATCTTCCATTTTTCCCGAGTCATCTTACTCGATGTCA 780
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 817 GACAAACGAGCACTGATCCATGCATCTTCCATTTTTCCCGAGTCGTCTTACTC-AT--C- 872
Query 781 TCATCGAGCAAGAAAAGAATGGAGCTAGAAGCAAAGAGAAGGAAAATAAGTGCAGCATCG 840
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 873 -----GAGCAAGAAAAGAATGGAGCTGGAAGCAAAAAGAAGGAAAATAAGCGCAGCATCC 927
Query 841 GCATCAAATCTGTTGAGAGGAGGATTCAAAGCTTCAGCTTTATCTACAAACCCATCAGCA 900
||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 928 GCATCAAGCCTATTGAGAGGAGGATTCAAAGCTTCATCTTTATCTACAAACCCATCAGCA 987
Query 901 AGCAAGTCCAAGGTTTCATCAGTTTCTGTAAGGAAACTGTAG 942
|||||| ||||||||||||||||||||||||||||||| |||
Sbjct 988 AGCAAGCCCAAGGTTTCATCAGTTTCTGTAAGGAAACTCTAG 1029
> AT1G25988.1 | Symbols: | Family of unknown function (DUF572)
| chr1:9016252-9017450 REVERSE LENGTH=543
Length=543
Score = 399 bits (216), Expect = 2e-110
Identities = 233/241 (97%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 301 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTTATCACTAGTGGTGCCCAGAAGAAG 360
|||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 74 GTCA-TAAGACAGATCCTCAGAACTGCGAGTATGTCATCACTAGTGGTGCCCAGAAGAAG 132
Query 361 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 192
Query 421 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAAAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 193 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAGAAG 252
Query 481 AAAGCAGCAGAACCGCTTTTGGTCCGTCTCCAGCGAGTCTCAGATGCAAGACATGCTGAT 540
||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 253 AAAGCAGCAGAACCGTTTTTGGTCCGCCTCCAGCGAGTTTCAGACGCAAGACATGCTGAT 312
Query 541 G 541
|
Sbjct 313 G 313
Score = 150 bits (81), Expect = 2e-35
Identities = 101/110 (92%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 579 GGGACACAGAAAACGTGTAGCAGAAGAAGAGGCTGCTTCAAGGAAGTTAGGCTT-GGG-G 636
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 313 GGGACACAGAAAACATGTAGCAGAAGAAGAGGCTGCTTCAAGGAAGCTAGGCTTGGGGAG 372
Query 637 -A-TAAGACTTCTTCCAAAGAGTGAAGAAGATATTAAAGCTGCCTCAAAC 684
| | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 373 AAGTCAGACTTCTTCGAAAGAGTGAAGAAGATATTAAGGCTGCCTCAAAC 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5