BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912452 Length=1023 Score E Sequences producing significant alignments: (Bits) Value AT1G25550.1 | Symbols: | myb-like transcription factor family ... 1107 0.0 AT1G68670.1 | Symbols: | myb-like transcription factor family ... 193 4e-48 AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 139 5e-32 > AT1G25550.1 | Symbols: | myb-like transcription factor family protein | chr1:8976434-8978093 FORWARD LENGTH=1396 Length=1396 Score = 1107 bits (599), Expect = 0.0 Identities = 921/1064 (87%), Gaps = 72/1064 (7%) Strand=Plus/Plus Query 1 ATGATGATGTTCAAGAGCGGTGACATGGAGGATCACACCCAGAAAATGAAGAGATGTCAC 60 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 211 ATGATGATGTTCAAGAGCGGTGACAT---GGATTACACCCAGAAAATGAAGAGATGTCAC 267 Query 61 GAATACGTAGAAGCTCTCGAAGAAGAACaaaaaaaGATTCAAGTCTTCCAACGTGAGCTC 120 ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 268 GAATATGTAGAAGCTCTAGAAGAAGAACAAAAAAAGATTCAAGTCTTTCAACGTGAGCTC 327 Query 121 CCTTTATGTTTAGAACTTGTAACCCAAGCTATTGAGTCATGTCGGAAGGAGCTATCGGGA 180 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | Sbjct 328 CCTTTATGTTTAGAACTTGTAACCCAAGCTATCGAGTCATGTCGGAAGGAGTTATCGGAA 387 Query 181 TCGTCGGAACATGTTGGCGGCCAATCAGAGTGTTCTGAGAGGACGACTAGTGAGTGCGGC 240 || || ||||||||||||||||| ||||| ||||||||| |||| |||||||| | || Sbjct 388 TCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAAT---GC 444 Query 241 GGCGGTGGCGGTGTCGTGTTTGAAGAGTTTATCCCGATTAAGTGGAGTTCTTCTTCATCC 300 |||||| || |||||||||||||||||| || || |||||||||||| ||||||| Sbjct 445 GGCGGT-GC-----CGTGTTTGAAGAGTTTATGCCAATCAAGTGGAGTTCTGCTTCATCT 498 Query 301 GATGAAACCGATAAAGATGAAG-A----AG----C--------TG----A-G--AATAAC 336 |||||||||||||||||||||| | || | || | | |||||| Sbjct 499 GATGAAACCGATAAAGATGAAGAAGCTGAGAAAACTGAGATGATGACCAATGAAAATAAC 558 Query 337 GGTGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAACCAATCGCCA 396 | ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 559 GATGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAATTGTGGAACCAATCACCA 618 Query 397 GATCCAAAACCTAAAGAGGATCATGTGACTAATAAAAAGACGAACGTAATCGAGGTCAAA 456 |||||| ||||| | || | | | | | ||| ||| ||||| || |||||| Sbjct 619 GATCCACAACCT----A--AT-A----A-T-A-AGAAA-CCGATGGTAATTGAAGTCAAA 663 Query 457 CGCAACGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAAGCTGCAGATTCTCAA 516 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 664 CGCAGCGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAGGCTGCAGATTCTCAA 723 Query 517 CCGCTTA--AAA-CAATCACTCCGACGTCGACGACGACATCTAGTTCCACGGCGGAAACA 573 || |||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 724 CCACTTATTAAAGCAATTACTCCGACGTCGACGACGACAACTAGTTCCACGGCGGAAACC 783 Query 574 GTCGGAGGT--AAAAGTGAGTTTGAGGATCAGAAACAATATCATTCGAATAGGAAGCAAA 631 ||||| ||| |||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 784 GTCGGGGGTGGAAAA--GAGTTTGAGGAGCAGAAACAATCTCATTCGAATAGGAAGCAAA 841 Query 632 GACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCACGCGCTTCAACAACTTGGTG 691 ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 842 GACGTTGCTGGTCACCGGAGTTACACCGCAGATTCTTGCACGCGCTTCAACAACTTGGTG 901 Query 692 GATCACATGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTCGATGGTTTAACTA 751 |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct 902 GATCACATGTTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTA 961 Query 752 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTC 811 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 962 ATGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTC 1021 Query 812 CGGTAATAACAAACGCTGGTGAAAATACACAACAACGGCAATTCATGGTGGTCGAAGGAA 871 ||||| ||| | || |||||||||| ||||||||||||| || |||||| | ||||| | Sbjct 1022 CGGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCA 1081 Query 872 TTTGGGTGCCGTCGCACGATACAACGAATAATAGAGTTTACGCTCCTGTGGCG------- 924 ||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct 1082 TTTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTGTGGCGACACAAC 1141 Query 925 -GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGCCGGCGTTGCAAATCGCC-GACAACA 981 | ||||||||| |||||||||||||||| | ||| |||||||||| || | ||||| Sbjct 1142 CGCCGCAATCTTCAACGTCGGGAGAGAGAAGCAATCGGGGTTGCAAATCTCCCG-CAACA 1200 Query 982 TCTTCT--T-CTacacacacaccacacCGTCTTCCTCTTTCATA 1022 |||||| | |||||||||||||||||| ||||||||||||||| Sbjct 1201 TCTTCTACTACTACACACACACCACACCTTCTTCCTCTTTCATA 1244 > AT1G68670.1 | Symbols: | myb-like transcription factor family protein | chr1:25782029-25784076 FORWARD LENGTH=1583 Length=1583 Score = 193 bits (104), Expect = 4e-48 Identities = 166/196 (85%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 613 CATTCGAATAGGAAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCAC 672 ||| || |||| || ||||| || ||||||||| |||| |||||||| ||||| | || Sbjct 946 CATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAAC 1005 Query 673 GCGCTTCAACAACTTGGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGATCTCAT 731 |||||||| || ||||| ||||| |||||||||||||| ||| || || || |||| ||| Sbjct 1006 GCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCACAT 1064 Query 732 GAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGC 790 |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| || | Sbjct 1065 GAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-C 1123 Query 791 ACACAAGAAGACCAGC 806 |||||||||| ||||| Sbjct 1124 ACACAAGAAGGCCAGC 1139 > AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family protein | chr1:4556892-4558708 FORWARD LENGTH=1237 Length=1237 Score = 139 bits (75), Expect = 5e-32 Identities = 149/184 (81%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 625 AAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGA-GATTCTTGCACGCGCTTCAACA 683 ||||||||| | || |||||| || | || || || | |||||| |||| ||||||| Sbjct 626 AAGCAAAGAAGGTGTTGGTCGTCGCAATTGCA-TAGACGCTTCTTGAACGCTCTTCAAC- 683 Query 684 ACTT-GGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGA-TCTCATGAAGGTCGA 740 |||| |||||| | ||||| ||||| || ||| || || || || | | |||||||| || Sbjct 684 ACTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTTGA 741 Query 741 TGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAG 800 ||| ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||| Sbjct 742 TGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAAG 801 Query 801 ACCA 804 ||| Sbjct 802 GCCA 805 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50133678706 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5