BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912743
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated 3... 941 0.0
AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD... 917 0.0
AT1G29380.1 | Symbols: | Carbohydrate-binding X8 domain superf... 217 3e-55
> AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated
314 thylakoid membrane 2 | chr1:10286293-10287904 REVERSE LENGTH=823
Length=823
Score = 941 bits (509), Expect = 0.0
Identities = 579/613 (94%), Gaps = 4/613 (1%)
Strand=Plus/Plus
Query 646 AAACCCTTTCTCTCTCTTAAACTCCGGCCTCGTTCGTCCGATCTCTCCCGTCTAGGTCAC 705
|||||||||||| |||||||||||||||||||| | || || ||||| |||||||||||
Sbjct 78 AAACCCTTTCTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCAC 137
Query 706 TGTACTAGTGCTGTTTGCTTCAATCC-TCTAAGGTTATCGGCTGATCGTCAGCGAATCGG 764
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 138 AGTACTAGTGTTGTTTGCTTCAATCCGT-TAAGGTTATCGGCTGATCGTCAGCGAACCGC 196
Query 765 TACGGTGTCGGCGAGGGTC-GAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 823
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TACGGTGTCGGCGAGGG-CTGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 255
Query 824 CTACTCCGATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 883
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CTACTCCAATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 315
Query 884 TGATGTTTGCAAGGGGTACTGCTATCCAGAAGTCCTTTGTTGTTCCACTATTTGCACTAC 943
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 316 TGATGTTTGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTAC 375
Query 944 AAGCACCATTGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 1003
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAGCACCAATGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 435
Query 1004 TGGCGCTTCTTACACGACTATTCTTCGCTTTTCCAGGTGAACTTGAGCTTCCATTCATTG 1063
||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||
Sbjct 436 TGGCGCTTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTG 495
Query 1064 CATTACTTTTGGTGATTGTGGCGCCATATCAAGTTATGGGCATAAGAGGGAAACAAGAAG 1123
| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 496 CTTTGCTTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAG 555
Query 1124 GTGCTATCCTTTCTTTAGCTATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 1183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GTGCTATCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 615
Query 1184 GCAACTTGCAGAGAGCATTTGATCAGAGTTCAGTTCTTGCCACTGTAGCCATAATTGGTG 1243
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 616 GCACCTTGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTG 675
Query 1244 TCACAGTTGTATC 1256
|||||||||||||
Sbjct 676 TCACAGTTGTATC 688
Score = 737 bits (399), Expect = 0.0
Identities = 578/662 (87%), Gaps = 22/662 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 86
Query 61 GTCTCTCTAAAACTCCGGCCTCGTCCTACAGATATCTCCGGTCTAGATCGCTGCACGAGT 120
|| |||| |||||||||||||||||| || ||||||||||||||| || | | || |||
Sbjct 87 CTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCACAGTACTAGT 146
Query 121 ACTGTTTGCTTCAATCCTCTT-AGATTATCAGG-TGATCGTCAGCGAACCTCTACGGTGT 178
||||||||||||||| || || ||||| || |||||||||||||||| |||||||||
Sbjct 147 GTTGTTTGCTTCAATCC-GTTAAGGTTATC-GGCTGATCGTCAGCGAACCGCTACGGTGT 204
Query 179 CGGCGAGGGTTGAGAAGCGGC----GA-A--A--GAGTGTGGTTTGTTATGC-AGCTCCG 228
||||||||| ||||||||||| || | | ||||||||| |||||||| | ||||
Sbjct 205 CGGCGAGGGCTGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTA-CTCCA 263
Query 229 A--TT-TCTG-TCGATAGTCTACAATGGATCTCGACCATTTCTTGCCTTGCATTGATGCT 284
| || |||| || ||| |||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 264 ATGTTGTCTGTTC-ATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCATTGATGTT 322
Query 285 TGCAAGGGGTACTGCTATCCATAAGTCCGTTGTTGTTCCACTATTCGCTCTACACGCACC 344
|||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 323 TGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTACAAGCACC 382
Query 345 -ATCGAGCATCATCACTTGGATAAAGGGAGAGTATGGCGTCTGGGCAGCATTCTTGGCGC 403
|| | |||| || | ||||| ||||| || |||||| |||||||||||||||||||||
Sbjct 383 AAT-GGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCTTGGCGC 441
Query 404 TTATTGCTCGACTGTTCTTCACTTTTCCAGGTGAACTTGAGCTGCCCTTCATTGCATTAC 463
|| || |||||||||||||| ||||||||| |||||||||||||||||||||||| || |
Sbjct 442 TTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTGCTTTGC 501
Query 464 TCTTGGTGATTGTGGCGCCATATCAAGTTATGAACATAAGAGGGAAGCAAGAAGGGGCAA 523
| ||||||||||||||||||||||||||||||| |||||||||||| || ||||| || |
Sbjct 502 TTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAGGTGCTA 561
Query 524 TCATATCAATAGCAATATCTTGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCT 583
|| | || ||||||| |||||||||||||||||||| ||||||||| ||||||| | ||
Sbjct 562 TCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAGGCACCT 621
Query 584 TGGAGAAAGCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 643
|| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 681
Query 644 TT 645
||
Sbjct 682 TT 683
> AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD
REGULATED 314 INNER MEMBRANE 1 | chr1:10288197-10289621 REVERSE
LENGTH=908
Length=908
Score = 917 bits (496), Expect = 0.0
Identities = 603/654 (92%), Gaps = 9/654 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 83 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCATTC 142
Query 61 GTCTCTCTAAAACTCCGGCCTCGTCCTACAGATATCTCCGGTCTAGATCGCTGCACGAGT 120
||||||| ||||||||| |||||||| ||||| |||||||||||| |||| |||||||
Sbjct 143 CTCTCTCTTAAACTCCGGTCTCGTCCTTCAGATCTCTCCGGTCTAGGTCGCCACACGAGT 202
Query 121 ACTGTTTGCTTCAATCCTCTTAGATTATCAGGTGATCGTCAGCGAACCTCTACGGTGTCG 180
|||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||| ||
Sbjct 203 CCTGTTTGCTTCAATCCGCTTAGGTTATCGGGTGATCGTCAGCGAACCGCTACGGTATCA 262
Query 181 GCGAGGGTTGAGAAGCGGC----GA-A--A--GAGTGTGGTTTGTTATGCAGCTCCGATT 231
||||||| |||||||||| || | | ||||||||| |||||||| |||||||||
Sbjct 263 ACGAGGGTGGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTGCTCCGATT 322
Query 232 TCTGTCGATAGTCTACAATGGATCTCGACCATTTCTTGCCTTGCATTGATGCTTGCAAGG 291
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 323 TCTGCCAATAGTCTACAATGGATCTCCACCATTTCTTGCCTTGCATTGATGCTTGCAAGG 382
Query 292 GGTACTGCTATCCATAAGTCCGTTGTTGTTCCACTATTCGCTCTACACGCACCATCGAGC 351
||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 383 GGTACTGGTATACATAAGTCAGTTGTTGTTCCACTATTCGCTCTCCACGCACCATCGAGC 442
Query 352 ATCATCACTTGGATAAAGGGAGAGTATGGCGTCTGGGCAGCATTCTTGGCGCTTATTGCT 411
||| || | ||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 443 ATCGTCGCCTGGATTAAGGGAGAGTATGGTGTATGGGCAGCATTCTTGGCGCTTATTGCT 502
Query 412 CGACTGTTCTTCACTTTTCCAGGTGAACTTGAGCTGCCCTTCATTGCATTACTCTTGGTG 471
||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 503 CGACTTTTCTTCACTTTTCCAGGTGAACTTGAGCTTCCATTCATCGCATTACTCTTGGTG 562
Query 472 ATTGTGGCGCCATATCAAGTTATGAACATAAGAGGGAAGCAAGAAGGGGCAATCATATCA 531
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 563 ATTGTGGCGCCATATCAAGTCATGAACATAAGAGGGAAGCAAGAAGGGGCAATCATAGCA 622
Query 532 ATAGCAATATCTTGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCTTGGAGAAA 591
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATAGCAATATCTGGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCTTGGAGAAA 682
Query 592 GCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAGTT 645
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 683 GCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATTATTGGTGTCACAGTT 736
Score = 654 bits (354), Expect = 0.0
Identities = 527/612 (86%), Gaps = 5/612 (1%)
Strand=Plus/Plus
Query 646 AAACCCTTTCTCTCTCTTAAACTCCGGCCTCGTTCGTCCGATCTCTCCCGTCTAGGTCAC 705
||||| || |||||||||||||||||| ||||| | || ||||||||| ||||||||| |
Sbjct 134 AAACCATTCCTCTCTCTTAAACTCCGGTCTCGTCCTTCAGATCTCTCCGGTCTAGGTCGC 193
Query 706 TGTACTAGTGCTGTTTGCTTCAATCCTCTAAGGTTATCGGCTGATCGTCAGCGAATCGGT 765
|| ||| |||||||||||||||| || |||||||||| |||||||||||||| || |
Sbjct 194 CACACGAGTCCTGTTTGCTTCAATCCGCTTAGGTTATCGGGTGATCGTCAGCGAACCGCT 253
Query 766 ACGGTGTCGGCGAGGGTCGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCT 825
||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ACGGTATCAACGAGGGTGGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCT 313
Query 826 ACTCCGATGTTGTCTGTTCA-TAATCTACAATGGATCTCGACAATTTCTTGCGTTGCATT 884
||||||| || ||| || || ||||||||||||||| || ||||||||| |||||||
Sbjct 314 GCTCCGAT-TT--CTGC-CAATAGTCTACAATGGATCTCCACCATTTCTTGCCTTGCATT 369
Query 885 GATGTTTGCAAGGGGTACTGCTATCCAGAAGTCCTTTGTTGTTCCACTATTTGCACTACA 944
|||| ||||||||||||||| ||| || ||||| |||||||||||||||| || || ||
Sbjct 370 GATGCTTGCAAGGGGTACTGGTATACATAAGTCAGTTGTTGTTCCACTATTCGCTCTCCA 429
Query 945 AGCACCATTGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCTT 1004
||||||| | |||| ||| ||||||| ||||| || ||||| | ||||||||||||||
Sbjct 430 CGCACCATCGAGCATCGTCGCCTGGATTAAGGGAGAGTATGGTGTATGGGCAGCATTCTT 489
Query 1005 GGCGCTTCTTACACGACTATTCTTCGCTTTTCCAGGTGAACTTGAGCTTCCATTCATTGC 1064
||||||| || | ||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 490 GGCGCTTATTGCTCGACTTTTCTTCACTTTTCCAGGTGAACTTGAGCTTCCATTCATCGC 549
Query 1065 ATTACTTTTGGTGATTGTGGCGCCATATCAAGTTATGGGCATAAGAGGGAAACAAGAAGG 1124
|||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 550 ATTACTCTTGGTGATTGTGGCGCCATATCAAGTCATGAACATAAGAGGGAAGCAAGAAGG 609
Query 1125 TGCTATCCTTTCTTTAGCTATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAGG 1184
|| ||| | | |||| || ||| |||||||||||||||| ||||||||| |||||||
Sbjct 610 GGCAATCATAGCAATAGCAATATCTGGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGG 669
Query 1185 CAACTTGCAGAGAGCATTTGATCAGAGTTCAGTTCTTGCCACTGTAGCCATAATTGGTGT 1244
| |||| ||| ||||| ||| || ||||||||||||||||||||||||| ||||||||
Sbjct 670 GAGCTTGGAGAAAGCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATTATTGGTGT 729
Query 1245 CACAGTTGTATC 1256
||||||||||||
Sbjct 730 CACAGTTGTATC 741
> AT1G29380.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:10284121-10285970 FORWARD LENGTH=1335
Length=1335
Score = 217 bits (117), Expect = 3e-55
Identities = 135/143 (94%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 1310 CAGAGGTTGCTGAACTCGGAAGCCCGGTTGGCTCTGCTACGCCGAAGGGTGGTCCAGAAC 1369
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 962 CAGAGGTTGCTGAATTCGGAAGCCCTGTTGGCTCTGCTACGCCGAAGGGTGGTCCAGAGC 903
Query 1370 CAGTTATGCCTGTAGTTGGAGTTGTTATTGGGGGTGGGTATGTAGATG--G-TGGGGAAT 1426
||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 902 CAGTTATGCCTGTAGTTGGAGTTGTTATTGGCGGTGGGTATGTAGATGATGGTGGGGAAC 843
Query 1427 TAAAATCTGGTGGACTCATTTGA 1449
|||||||||||||||||||||||
Sbjct 842 TAAAATCTGGTGGACTCATTTGA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5