BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912896
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30690.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 2566 0.0
> AT1G30690.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:10887705-10890315 FORWARD LENGTH=1984
Length=1984
Score = 2566 bits (1389), Expect = 0.0
Identities = 1564/1645 (95%), Gaps = 26/1645 (2%)
Strand=Plus/Plus
Query 1 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 191
Query 61 GCTGTTGTTCCTGAGGAGACCACTGTGAAATCTGTTGTGGAAGAGGAAGAAGTCAAAGCT 120
|||||||||||||||||||| ||||| || ||||||||| | | | || | | |||
Sbjct 192 GCTGTTGTTCCTGAGGAGACTACTGTTAAGGCTGTTGTGG-A-A-G-AG-A--CTAAG-- 242
Query 121 GTTGAAGAAGATGAGAGCAAGCCTAAGGGTGTGGAGAAGAGTGCTTCGTTTAAAGAAGAG 180
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 243 GTTGAAGAAGATGAGAGCAAGCCTGAGGGTGTGGAGAAGAGTGCTTCCTTCAAAGAAGAG 302
Query 181 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCTCTGAGTGATCTCAAGTCT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCACTGAGTGATCTCAAGTCT 362
Query 241 AAGCTTGAGGAAGCTATTGTTGAAAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 AAGCTTGAGGAAGCTATTGTTGACAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 422
Query 301 CCTGTTaaggagaagaaggaagaggtggtgaaaccagaagctgaggttgagaagaagaag 360
||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 423 CCTATGAAGGAGAAGAAGGAAGAGGTTGTGAAACCTGAAGCTGAGGTTGAGAAGAAGAAG 482
Query 361 gaggaagaagcagaggagaaggttgaggaagagaagaaATCTGAGGCTGTTGTTACCGAA 420
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 GAAGAAGCAGCAGAGGAGAAGGTTGAAGAAGAGAAGAAATCTGAGGCTGTTGTTACCGAA 542
Query 421 GAAGCAGCGAAAGATGAGACTGTTGAGG-TGGTTGCTGCAGAGGAGATAACCCCCAAGga 479
|||||| |||||| |||||||||||||| | |||| | |||||||||||| |||||||||
Sbjct 543 GAAGCACCGAAAGCTGAGACTGTTGAGGCT-GTTGTTACAGAGGAGATAATCCCCAAGGA 601
Query 480 agaagtgacgactgttgttgagaaggtagcagaagaagatagtaaggaagaagaagagaa 539
||||||||| ||||||||||||||||| ||||||||| | || | |||||||||||
Sbjct 602 AGAAGTGACTACTGTTGTTGAGAAGGT---AGAAGAAGAAACCAA-G--GAAGAAGAGAA 655
Query 540 gaaaactgaggatgttgttactgaagaagtgaaagCTGAGACTATCGAGGTGGAGGATGA 599
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 656 GAAAACCGAGGATGTTGTTACTGAAGAAGTGAAAGCTGAGACTATTGAGGTGGAGGATGA 715
Query 600 AGATGAGTCAGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGATGAGTCGGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 775
Query 660 AGCTGAAAGCACAGACGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 719
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGCTGAAAGCACGGATGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 835
Query 720 TGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAACACAAGATTGATTT 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 CGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAAAACAAGATTGATTC 895
Query 780 GATCCTTGGAGAGGACTTTGGGGAGGATCTTGCCTCTGCAGCTTACATGAACGGTGTGGA 839
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 896 GATCCTTGGAGAGGAGTTTGGGGAGGATCTTGCCACTGCAGCTTACATGAACGGTGTGGA 955
Query 840 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGTGAGGAGGTTTACCAGACGACATT 899
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |
Sbjct 956 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGCGAGGAGCTTTACCAGACG--A-T 1012
Query 900 TGGGTCAGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGGTCGGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 1072
Query 960 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCATGATCT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCACGATCT 1132
Query 1020 CAAAAACGCTCCTGGAATGTCAAGAACAGATCTCTGGGTTGGAATCAAGAACGTAATC-A 1078
|||||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| |
Sbjct 1133 CAAAAACGCTCCTGGAGTGTCAAGAACAGAGATTTGGGTCGGAATCAAGAAAGTAATCGA 1192
Query 1079 TGACTTTGCAGGACAATTATCCGGAATTCGTGTCCAGAAACATATTCATCAATGTTCCAT 1138
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1193 -GACTTTGCAGGACAACTATCCGGAATTCGTGTCCAGAAACATATTCATCAACGTTCCAT 1251
Query 1139 TCTGGTTCTACGCCATCA-ATGCTGTCCTCTCGCCATTCTTAACGCAACGAACCAAGAGC 1197
|||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 TCTGGTTCTACGCCATGAGA-GCTGTCCTCTCGCCATTCTTAACTCAACGAACCAAGAGC 1310
Query 1198 AAGTTTGTTGTGGCTCGTCCAGCTAAGGTCAAAGAGACTCTTCTCAAGTACATTCCAGCT 1257
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1311 AAGTTTGTTGTGGCTCGTCCCGCTAAGGTCAGAGAGACTCTTCTCAAGTACATTCCAGCT 1370
Query 1258 GATGAGCTCCCAGTTCAGTACGGAGGGTTCAAAACAGAT-GACGATACCGAATTCTCCAA 1316
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 1371 GATGAGCTCCCAGTTCAGTACGGTGGGTTCAAAACAG-TAGACGATACCGAATTCTCCAA 1429
Query 1317 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1489
Query 1377 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1549
Query 1437 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1609
Query 1497 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1669
Query 1557 GATTGTTCTTACGGTTGACAATGTCTCTGGCAAGAAGAAGAGAGTTCTGTACAGGTACAG 1616
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1670 GATTGTTCTTACCGTTGACAATGTCTCTGGCAAGAAGAAGAAAGTTCTGTACAGGTACAG 1729
Query 1617 AACCAAGACTGAATCCTCTTCCTGA 1641
|||||||||||||||||||||||||
Sbjct 1730 AACCAAGACTGAATCCTCTTCCTGA 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5