BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913127 Length=1821 Score E Sequences producing significant alignments: (Bits) Value AT1G33050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2542 0.0 > AT1G33050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10470.1); Has 531 Blast hits to 229 proteins in 83 species: Archae - 0; Bacteria - 197; Metazoa - 59; Fungi - 50; Plants - 48; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | chr1:11967827-11971532 REVERSE LENGTH=2677 Length=2677 Score = 2542 bits (1376), Expect = 0.0 Identities = 1659/1794 (92%), Gaps = 25/1794 (1%) Strand=Plus/Plus Query 1 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCATCCGCTAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 280 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCTTCCGCTAAA 339 Query 61 CCTTTCGCAATCGGttcttcttcttctccttccttctctctcAAATCTGAACACGAAGAT 120 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 340 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTGCCTTCTCTCTCAAATCTGAACACGAAGAT 399 Query 121 TCTATCTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAAAGAAGT 180 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 400 TCTATTTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAGAGAAGT 459 Query 181 GGTCTTGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTGGAGACTAACAAAGAA 240 ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 460 GGTCTCGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTTGAGACTAATAAAGAA 519 Query 241 GGATTGGTTTTGGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCC- 299 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 GGATTGGTTTTAGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCCA 579 Query 300 AGTTTTCTCGAAATTGCCTGAGGTACTGATAAAGCCCTCAAATGTTGCTGGTGATGCAAA 359 || |||||||||||||||||||||| |||| ||| ||||| |||||| ||||||||| || Sbjct 580 AG-TTTCTCGAAATTGCCTGAGGTATTGATGAAGTCCTCAGATGTTGTTGGTGATGCGAA 638 Query 360 GTTGGGTCTGTCCTGTGTCTCTGAGAAATCGTCTACAGAGTCTGATGAAGATGACTCTGA 419 ||||||| ||||||||||||||||||| || ||||| |||||||| |||||| ||||| Sbjct 639 GTTGGGTTTGTCCTGTGTCTCTGAGAAGTCTTCTACGGAGTCTGACCTAGATGAGTCTGA 698 Query 420 GGAAGATTCTCCTTGTTGGATAGGAATGCATTCTCACAAGAGTCTGGCTTCAGGTGCTAA 479 |||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| |||| Sbjct 699 GGAAGATTCTCCTTGTTGGAAAGGAATGCTTTCTCATAAGAGTCTGGCTTCTGGTACTAA 758 Query 480 AGCTGTGGCTTCGAGGCGTTCGACTGATGATCTTAGTGGGTTTCAT-AGATTGAATCCTT 538 | || || |||| |||||||| |||||||||||||||||||||| | || |||||||||| Sbjct 759 ATCTATGACTTCCAGGCGTTCTACTGATGATCTTAGTGGGTTTCGTAAG-TTGAATCCTT 817 Query 539 TGGCACCTCAGTTTGTACCATCTAATTCTAAGAAGAAAGTTGAAACGGATGGGGAAAAAT 598 |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||| Sbjct 818 TGGCACCTCAGTTTATACCATCTAGTTCTAAGAAGAAACTTGAAACGGATGGGGAGAAAT 877 Query 599 GTGAAGAGAATAGTTCTTCGTCTTTGAAGAAGTCTCTGTCTTCAACTTTTCCGTCGTCAT 658 ||||||||| |||||||||||| |||||||||||| |||| || |||||||||||||| | Sbjct 878 GTGAAGAGACTAGTTCTTCGTCGTTGAAGAAGTCTTTGTCCTCGACTTTTCCGTCGTCGT 937 Query 659 CTGGAGAGTTCGATTTAACTGACCCTCCTCCTGAAGATGGAAGAAATGATGCAG-A-AAA 716 ||||||| || ||||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 938 CTGGAGAATTTGATTTAACTGACCCTCCTCTTGAAGATGGAAGAAATGATGCAGCAGAAA 997 Query 717 ACTGACAAGCATATTGACCCACAATGCAGATAAAATTTTCGGTTTTGTATCTAGTGATAG 776 | ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 998 A--GACAAGCATCTTGACCCACAATGCAGATGAAATTCTCGGTTTTGTAACTAGTGATAG 1055 Query 777 CGGTTCCAAGACCGTGAGCATTTTGGATTCTAGAAATGAATTCCAACCATCGAAAAGGTT 836 | ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1056 TGTTTCCAAGACTGTGAGCATGTTGGATTCTAGAAATGAATTCCAACCATCTAAAAGGTT 1115 Query 837 GGATCCTTTAGCCCCTGTTTTTGTTCCCTCTAGTGCAAAACTAAGTCCTTCTGTCCATGA 896 ||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct 1116 GGATCCTTTGGCCCCTGTCTTTGTTCCCTCTAGTGCAAAACTAGGTCCTTCTGTTCATGA 1175 Query 897 GAAGCAAGGAGCGTTTGAGGCAAATGCACATCCAACTTCTGCTCTTACTTCTTCAGATGA 956 ||||| ||||| |||| || ||||||| || |||||||||||||| |||||||| ||| Sbjct 1176 GAAGCTAGGAGATTTTGTGGTAAATGCATATTCAACTTCTGCTCTTGCTTCTTCACATGT 1235 Query 957 TAAGTCACTAAATAAGGTCAAGGTAGCGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1016 |||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1236 TAAGTCGCTAGATAAGGGCAAGGTAGTGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1295 Query 1017 GAGTCGATATGGTGGTCATGATTTAAGTTCCACATCTTCATACAATCCTTGGATTGAATC 1076 ||||| |||||||||||||||||| |||| |||||||||||| ||||||||| ||||| Sbjct 1296 GAGTCAATATGGTGGTCATGATTTTGGTTCGACATCTTCATACGGTCCTTGGATAGAATC 1355 Query 1077 CAACGTTGGGATTACTGAGTATGCTAAACTAGGAAGCTCCAGCAACAAATCTCAAGGTCA 1136 | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1356 TGAGGTTGGGATTACTGAGTATGCAAAACTAGGAAG---CAGCAACAAATCTCAAGGTCA 1412 Query 1137 GCGGAGATTGAATCCATTGGCCAGTCAGTTCTCTCTTGCAGATGCTAAACCGAAAG-CAT 1195 |||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||| Sbjct 1413 GCGGAGATTGAATCCATTGGCCCGTCAGTTCTCTCTTGCAGATGCTAAA-CAAAAGCCAT 1471 Query 1196 ATGACTACGAG-AAAAACCAAACTTCAGATGATTTATCGCTAGTGGTGAATACTA-CTGG 1253 ||| ||| | | ||||||||| || |||||||||||||||||||||||||||||| | || Sbjct 1472 ATGGCTATG-GTAAAAACCAAGCTGCAGATGATTTATCGCTAGTGGTGAATACTAGC-GG 1529 Query 1254 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1530 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1589 Query 1314 ATCCTCAGTATATGTGGAACG-TTTCATTCCCAACATGTCACATGGCAGTTCTTCACTTA 1372 |||||||||| ||||||| || |||| |||||||||||||||||||| |||||||||||| Sbjct 1590 ATCCTCAGTAAATGTGGAGCGTTTTC-TTCCCAACATGTCACATGGCGGTTCTTCACTTA 1648 Query 1373 TATCTCCAAAGGCAGACAGTAACATTGGGTCTACTAAGTGGTTTGCAGTGGAGCCAAATC 1432 || |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| | Sbjct 1649 TAACTCCAAAGGCAGACAGTAACTTTGGGTCTACTAAGTGGATTGCGGTGGAGCCAAACC 1708 Query 1433 CTACATTTTCAGTAAAGGGTAGTAGAGATCTTAAGCATCCTCTTCCATTTCATGTTGTAG 1492 ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 1709 CTACATTTTCAGTAAAGGGTAATAGAGATTTTAAGCATCATCTTCCATTTCATGTTGTAG 1768 Query 1493 ATACTGCAGCGAGTTCATCTACAAGTGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1552 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1769 AAACTGCAGCGAGTTCATCTACAAGCGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1828 Query 1553 TGGATGTGAAGAAACTACTTACAACGATGCATGGACTGTCAGAGTTACTAACACTTGCAC 1612 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1829 TGGATGTGAAGAAACTACTTACAACGATGCATGGGCTGTCAGAGTTACTAACACTTGCAC 1888 Query 1613 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1889 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1948 Query 1673 TACAGAATTTCAACTTGTACATCCAAAACAACACCCAGG--C-TG--GG-AATCAAAGCG 1726 |||||||| |||| ||||||||||||||||||| |||| | || || |||||||||| Sbjct 1949 TACAGAATCTCAATTTGTACATCCAAAACAACAGTCAGGAACATGCTGGGAATCAAAGCG 2008 Query 1727 TTGCACAACGCAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 1780 |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2009 TTGCACAATACAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 2062 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90109978275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5