BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913140
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10095.1 | Symbols: | Protein prenylyltransferase superfami... 1790 0.0
> AT1G10095.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr1:3297324-3300443 REVERSE LENGTH=1507
Length=1507
Score = 1790 bits (969), Expect = 0.0
Identities = 1176/1276 (92%), Gaps = 14/1276 (1%)
Strand=Plus/Plus
Query 1 ATGAGACAAGGATCATGTTCTGAAGAAGGTTGCTTTACCTTGTTGAAGCTGTTCGAGCAT 60
|||| ||||||| ||| ||||||||| | |||||||| ||||||||||| ||||||||||
Sbjct 91 ATGAAACAAGGACCATCTTCTGAAGATGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCAT 150
Query 61 GTTCTTGAATCTGACCCTCTTATTGATGAAGTAGGTTTTATTCACCCCTCACAATTCAAC 120
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 151 GTCCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTCACC 210
Query 121 ATGCTGGATGAAGAAGCAGGTTCCTTCAGTGTCTATCAAAATGAACACCAGCCTAACAAT 180
||||| ||| |||||||||| | ||| || | |||||| |||||||||||||
Sbjct 211 ATGCTCGATAAAGAAGCAGG-T--TTC----TC---C--AATGAATTCCAGCCTAACAAT 258
Query 181 GAAACCTCAAGAAAATTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATACTT 240
| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GGAACCTCAAGCAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATACTT 318
Query 241 GTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTTGCGTTTGAGGAGTACAAA-CG 299
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
Sbjct 319 GTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTAGCGCTTCAGGAGTACAAATC- 377
Query 300 CCATGGAAACGCTTGTAATGAGTCTCAAATTGAGAATTTCTCTTGTTCCCCCGGTACTCC 359
|||||||||||| ||| |||||||||| ||| ||||| |||||||||| ||| ||| |||
Sbjct 378 CCATGGAAACGCATGTGATGAGTCTCAGATTAAGAATATCTCTTGTTCTCCCTGTATTCC 437
Query 360 CGAGATTGAAGTTATGAGGCATAGCCAAGCTGTTTTGCTGTTAAGTTCAGACTTTGGAAC 419
||||| ||| || |||| |||||||||| ||||||||||||| || ||||||||||||||
Sbjct 438 CGAGAGTGACGTCATGAAGCATAGCCAATCTGTTTTGCTGTTGAGCTCAGACTTTGGAAC 497
Query 420 TGCATGGAATGCTAGAAAGTTGATATTATCAAAAAAGGATCAACTTTCGGCATTCACGGA 479
||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 498 TGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCACCTTTCGGCATTCACAGA 557
Query 480 AGAACTTCGTCTCTCTGGGCTCATTCTTTCAAATTCTCCTAAGAGTGAGTCAACATGGAG 539
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 558 AGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCCCCAAAGAGTGAGTCAACATGGAG 617
Query 540 CCATAGAAGGTGGATAATTAAGATGATTTCTCAGAGATTTTCTACACCACAAGTGATTAT 599
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||
Sbjct 618 CCATAGAAGGTGGATAATTAAGATGATTTCCCAGAGTTTTTCTACACTACAAGAGATTAT 677
Query 600 AACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCGTGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCGTGC 737
Query 660 ATGGTATCACCGTTGCTGGTTGGTTTCCTACATGGCAATTGAGCAGGTGATACAAGAGTT 719
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 738 ATGGTATCACCGTTGCTGGTTGGTTTCTTACATGACAATTGAGCAGGTGATACAAGAGTT 797
Query 720 GAACAAATCTAAAAGGTGGGCCGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTATCG 779
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 798 GAACAAATCTAAAAGATGGGCTGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTATCG 857
Query 780 TAGACGGTTGATGCTCAAGATTTTGGAGTCACTTTATGTGAAAGGAGGCAATGCTTATGA 839
|||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 858 CAGACGGCTGATGCTCAAGATTCTGGAGTCACTTTATGTGAAAGGAAGCAGCGCTTATGA 917
Query 840 TAAATCTGAGGCACGTAAAATCTGGAAGGAAGAGCTGGATTGGAACAAAGAATTGGTAGA 899
|||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 918 TAAAACTGAGGCACGCAAAATCTGGAAGGAAGAGCTGGATTGGAATGAAGAATTGGTAGA 977
Query 900 ACGTTACGTGGGACGAGAGGCCCTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGGAT 959
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACGTTACGTGGGACGAGAGGCACTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGGAT 1037
Query 960 AATATATTTCGCTTGCAATGATTCAGATGTTTCACCTGAACCCGGAGAGAGTATCATTAT 1019
||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||
Sbjct 1038 AATGTATTTCGCTTGCAATCATTCAGATGCTTCACCTGAAACCGGAGAGAGTATTATTAT 1097
Query 1020 GAATGAAGAAATTGCCATCTTCATTGATAACGAGATCCATCTTCTAGAATCTTCTATGAT 1079
|||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 1098 GAATGAAGAAATTGCCATCTTCATTGATAATGAGATCCGTCTTCTAGATTCTTCTATGAC 1157
Query 1080 CGTTCCGGATACCAAATTTGAAGATTTCCAAGCTCAAGCATTGCATGCTGGTGTCTACAT 1139
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1158 CGTTCCGGATACCAAATTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTACAC 1217
Query 1140 GCTATGGCTAACAAAGAAAATGCCAGAATTGTGGAGAATGGTTGAGGAGAAGCTTGGAAC 1199
||||||||| ||||||| || |||| | ||||||||||| | |||||||||||||||||
Sbjct 1218 GCTATGGCTGACAAAGAGCATTCCAGTACTGTGGAGAATGCTCGAGGAGAAGCTTGGAAC 1277
Query 1200 AGAGAAAGTGAAGTGTGTACTGAGCACAATTGCTCAAGAGAGACCCTCACTTTTGCATCA 1259
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 1278 AGAGAAAGTGAAGTGTGTACTGAACACAATTGCTCAAGAGAGACCCTCGCTTCTGCATCA 1337
Query 1260 TTTGGTGAATGTCTGA 1275
||||||||||||||||
Sbjct 1338 TTTGGTGAATGTCTGA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5