BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913410
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35470.2 | Symbols: | SPla/RYanodine receptor (SPRY) domain... 1171 0.0
AT4G09340.1 | Symbols: | SPla/RYanodine receptor (SPRY) domain... 318 8e-86
> AT1G35470.2 | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing
protein | chr1:13051410-13054988 REVERSE LENGTH=1696
Length=1696
Score = 1171 bits (634), Expect = 0.0
Identities = 702/735 (96%), Gaps = 4/735 (1%)
Strand=Plus/Plus
Query 723 GGGATATGAAGCAACAGAGAGGAATAAGCAACAAATAACTATCGAAAAACTATCCACACC 782
||||||||||||| |||||||||||||||||||| | |||| |||||| |||||| |||
Sbjct 738 GGGATATGAAGCATCAGAGAGGAATAAGCAACAATTGGCTATTGAAAAAATATCCATACC 797
Query 783 TCCAAACATTGGTTATGGGCTTGTAAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 842
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 798 TCCAAACATTGGTTATGGGCTTGTCAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 857
Query 843 ACTCAATGCTTTCAACCTTGCTACTCAAACTACAGTTCCTCCAATCCATATAGATCAAGA 902
|||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 858 ACTCGATGCTTTCAACCTTGCTACTAAAAATACAGTTCCTCCAATTCATATAGATCAAGA 917
Query 903 AAATGCTATTGATGAGGATGATTCCTCATATGCCTTGAAACAGAGAAAGAATTTTAGACA 962
|||||||||||| ||||||||||| || ||||| |||||||||||||||||| |||||||
Sbjct 918 AAATGCTATTGACGAGGATGATTCATCCTATGCTTTGAAACAGAGAAAGAATCTTAGACA 977
Query 963 GCTTGTTAGGAATGGTGAGATTGATACTGCTCTGGCGGAACTCCGAAATTTGTATCCCCA 1022
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 978 GCTTGTTAGGAATGGTGAGATTGATACTGCTTTGGCGGAACTCCAAAAGTTGTATCCCCA 1037
Query 1023 AATTGTACAGGATGATAAATCTGTAGTTTGCTTCCTCCTTCAATGTCAAAAGTTTATTGA 1082
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1038 AATTGTACAGGACGATAAATCTGTAGTTTGCTTCCTCCTTCACTGTCAAAAGTTTATTGA 1097
Query 1083 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAAGTATGGCAGACTCGAGTTAGCTAA 1142
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1098 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAACTATGGCAGACTCGAGTTAGCTAA 1157
Query 1143 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTACTCGTGTA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1158 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTGCTCGCGTA 1217
Query 1203 TGAAAAGCCTGAGGAATCATCGGT-TGGGTATTTCCTAGAAGACTCGCAGAGGGAACTAG 1261
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||
Sbjct 1218 TGAAAAGCCTGAGGAATCATCGGTCT-GGTATTTCCTAGAAGACTCACAGAGGGAATTAG 1276
Query 1262 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1336
Query 1322 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1396
Query 1382 TGGAAAGGCGGTCACTGAGTGGAGACCAAGGTGAAACATTCCGGCTTC-ACCATGTTCTT 1440
| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1397 TAGAAAGGCGGTCACTGAATGGAGACCAAGGTGAAACATTCCGGCTTCGAC-ATGTTCTT 1455
Query 1441 AACAACAACAGATAA 1455
|||||||||||||||
Sbjct 1456 AACAACAACAGATAA 1470
Score = 1083 bits (586), Expect = 0.0
Identities = 645/674 (96%), Gaps = 2/674 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCTTCACCGCCGCCGGCGAATTCCGCCAACGGCGATACAACCAACAACGTCGTG 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 67 ATGAACTCTTCACCACCACCGGCGAATTCCGCCAACGGCGATACAACCAACAACGGCGAG 126
Query 61 AACGGTCAAGATCTGAACTTAAACTTCTTGGACAAGATTCGTCTCTCCGCGACACGAGAT 120
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 127 AACGGTCAAGATCTGAACTTAAACTTCTTAGACAAGATTCGTCTCTCCGCTAAACGAGAT 186
Query 121 GCGAAGGAAGACGAAGGAGAAGATTTACCGACGGAGCTT-AACACGATCAATAGCGCCGG 179
||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||
Sbjct 187 GCGAAGGAAGACGAAGGAGAAGAATTACCGACGGAG-TTGAATACGATCAATAGCGCCGG 245
Query 180 CGGGTTTCTTGTGGTTTCTCCGGATAAGCTTTCCGTGAAGTACACTAATACGAATCTACA 239
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 246 CGGATTTCTTGTGGTTTCTCCTGATAAGCTTTCCGTGAAGTACACGAATACGAATCTACA 305
Query 240 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 365
Query 300 CTACTTTGAGATTTTTGTTAAAGATTCTGGGATTAAAGGTCAAATTGCTATTGGTTTTAC 359
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 366 CTACTTTGAGATTTTTGTTAAAGATTCTGGTATTAAAGGACAAATTGCTATTGGTTTTAC 425
Query 360 TAAGGAAAGCTTCAAAATGCGGAGACAACCTGGATGGGAAGTGAACAGCTGTGGCTATCA 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 426 TAAGGAAAGCTTCAAAATGCGTAGACAACCTGGATGGGAAGTGAACAGCTGTGGATATCA 485
Query 420 TGGGGATGATGGATTCCTATATCGTGGACAGGGGAAAGGTGAACCTTTTGGTCCGAAGTA 479
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 486 TGGGGATGATGGATACCTATATCGTGGACAGGGAAAAGGTGAACCTTTTGGTCCAAAGTT 545
Query 480 TACAAAAGATGATACAGTTGGCGGTGGTATAAACTATGCTTCGCAAGAGTTCTTTTTCAC 539
||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 546 TACAAAAGATGATGCAGTTGGCGGTGGTATAAACTACGCTTCTCAGGAGTTCTTTTTCAC 605
Query 540 TAAAAACGGAGCTATTGTTGGGAAAATCCCTAAGGACATAAGAGGTCATCTATTCCCTAC 599
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 606 TAAAAACGGAACTATTGTTGGGAAAATCCCCAAGGACATAAGAGGTCATCTATTCCCTAC 665
Query 600 TGTAGCTGTACATAGCCAAAATGAGGAGGTATCAGTCAATTTTGGGAAGAAGAAATTTGC 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 TGTAGCTGTACATAGCCAAAATGAGGAGGTATTAGTCAATTTTGGGAAGAAGAAATTTGC 725
Query 660 TTTCGATATTAAGG 673
||||||||||||||
Sbjct 726 TTTCGATATTAAGG 739
> AT4G09340.1 | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing
protein | chr4:5924602-5927635 REVERSE LENGTH=1795
Length=1795
Score = 318 bits (172), Expect = 8e-86
Identities = 435/558 (78%), Gaps = 34/558 (6%)
Strand=Plus/Plus
Query 133 GAAGGAGAAGATTTACCGACGGAGCTT-AACACGATCAATAGCGCCGGCGGGTTTCTTGT 191
|||| |||||| | |||||||||| || |||||||||| | |||| ||| | ||
Sbjct 108 GAAGAAGAAGAATCACCGACGGAG-TTAAACACGATCACCGGTTTAAGCGGTTTTGTAGT 166
Query 192 GGTTTCTCCGGATAAGCTTTC-CGTGAAGTACACTAATACGAATCT--ACATGGTCACGA 248
| ||||| |||||||| || | | || |||||| || ||| ||| ||||||||
Sbjct 167 TATCTCTCCCGATAAGCTATCTC-TCAAATACACT--GGCGTTTCTCAACACGGTCACGA 223
Query 249 TGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGAT-CAAGTGTCTT-ACTTACTACTTT 306
||| || ||||||||||||||||||||||||||| | || || || |||| |||||
Sbjct 224 TGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCG-TGTAAACGT-TTCGCTTATTACTTC 281
Query 307 GAGATTTTTGTTAAAGATTCTGG-GATTAAAGGTCAAAT-TGCTATTGGTTTTACTAAGG 364
||||||| |||||||||| |||| | ||||||| | | | | |||||||| ||| |
Sbjct 282 GAGATTTATGTTAAAGATGCTGGTG-TTAAAGGACGTGTCT-CCATTGGTTTCACT-ACT 338
Query 365 AA-AGCTTCAAAATGCG-GAGACAACCTGGATGGGAAGTGAACAGC-TGTGGCTATCATG 421
|| || |||| ||| || |||||| |||||||||||| | |||| | ||||| |||||||
Sbjct 339 AATAGTTTCAGAAT-CGCGAGACATCCTGGATGGGAACTCAACA-CTTGTGGTTATCATG 396
Query 422 GGGATGAT-GGATTCCTATATCGT-GGACAGGGGAAAGGTGAACCTTTTGGTCCGAAGTA 479
| || ||| || || |||||| | ||| | | |||||||| |||||||||||| ||
Sbjct 397 GTGAAGATGGGCTT-ATATATC-TAGGAAAACGTCAAGGTGAAGCTTTTGGTCCGACTTA 454
Query 480 TACAAAAGATGATACAGTTGGCGGTGGTATAAACTATGCTTCGCAAGAGTTCTTTTTCAC 539
||||| | |||||| ||||| |||||||||||||||| |||||| || |||||||||||
Sbjct 455 TACAACTGGTGATACTGTTGGTGGTGGTATAAACTATGATTCGCAGGAATTCTTTTTCAC 514
Query 540 TAAAAACGGAGCTATTGTTGGGAAAATC-CCTAAGGACAT-AAGAGGTCATCTATTCCCT 597
| ||| ||| || | || |||| | || || ||| |||| ||| |||| ||||||||||
Sbjct 515 TGTAAATGGAACTCTGGTAGGGACAGTCTCC-AAGTACATCAAG-GGTCCTCTATTCCCT 572
Query 598 ACTGTAGCTGTACATAGCCAAAATGAGGAGGT-ATCAGTCAATTTTGGGAAGAAGAAATT 656
||||||||||||||||||||||| || ||||| | ||||||| || ||| || |||| ||
Sbjct 573 ACTGTAGCTGTACATAGCCAAAACGAAGAGGTTA-CAGTCAACTTCGGGCAGGAGAAGTT 631
Query 657 TGC-TTTCGATATTAAGG 673
||| ||| ||| ||||||
Sbjct 632 TGCCTTT-GATTTTAAGG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5