BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913497
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36990.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2784 0.0
AT4G08510.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 649 0.0
> AT1G36990.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
14 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to
1779 proteins in 339 species: Archae - 2; Bacteria - 1372;
Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other
Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027292-14030500
REVERSE LENGTH=2837
Length=2837
Score = 2784 bits (1507), Expect = 0.0
Identities = 1673/1753 (95%), Gaps = 11/1753 (1%)
Strand=Plus/Plus
Query 1 ATGGACAAAGGTGAACACTCTTTAGCTCCGGAATGGTTGAGAAGTTCAGGGCATGCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATGGACAAAGGTGAACACTCTTTAGCTCCGGAATGGTTGAGAAGTTCAGGGCATGCTTCT 849
Query 61 GGTGGTGGGAGTTCAAACCACCTCCTTGTATCATCCTCTTCTCATTCAGATTCTGCATCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGTGGTGGGAGTTCAAACCACCTCCTTGTATCATCCTCTTCTCATTCAGATTCTGCATCT 909
Query 121 TTACAACATAATAGCAGGAATAGGAACTCTAGGAGCAAAAGTGACGTTGATTCAATTCAT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTACAATATAATAGCAGGAATAGGAACTCTAGGAGCAAAAGTGACGTTGATTCAATTCAT 969
Query 181 TCTCCTTTTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCGCTAGTAATGGTTCT 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 970 TCTCCTTTTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCTCTAGTAATGGTTCT 1029
Query 241 GCAAAGCATGCATATAGTAGTTTCAACTTTAATAGGAGTCAAAGGGATAAGGACCGCAGC 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GCAAAACATGCATATAGTAGTTTCAACTTTAATAGGAGTCAAAGGGATAAGGACCGCAGC 1089
Query 301 AGGGACAAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACCTCTATCCCTCTT 360
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1090 AGAGACAAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACTTCTATCCCTCTT 1149
Query 361 AGAACTATCTTGACTGGTAGGGATCCGGATCCATTGAGACGATCACATTCAATGGTAACA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1150 AGAACTATCTTGACTGGTAGGGATCCGGATCCATTGAGACGATCACATTCAATGGTTACA 1209
Query 421 AGGAAACAGGGAGACCACCTGTCTCGAGGATTAACAGTGGGCTTGAAAAATGGTGGCACT 480
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1210 AGGAAACAGGGAGAACACCTGTCTCGAGGATTAACAGTGGGCTTGAATAATGGTGGCAGT 1269
Query 481 GGTAATAGTTACAATGGAAACGGAGTACTCTCTGGACCTAGCATTGGGAATAGCTTTCAG 540
||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1270 AGTAATAGTTACAACGGAAATGGACTACTTTCTGGACCTAGCATTGGGAATAGCTTTCAG 1329
Query 541 AGAACTGGGTTTGATAAGGATTTTCCTTCTCTTGGAGCTGAAGAGAAGCAAAATGGGCAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 AGAACTGGGTTTGATAAGGATTTTCCTTCTCTTGGAGCTGAAGAGAAGCAAAATGGGCAA 1389
Query 601 GATGTTGTACGAGTCTCATCTCCTGTTATAAGTTCAGCTGTTCAGAACTTACCAGTTGGT 660
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 1390 GATGTTGTACGAGTCTCATCTCCTGGTATAAGTTCAGTTGTTCAGAACTTGCCAGTTGGT 1449
Query 661 AACTCAGCTTTGATTGGTGGGGAAGGTTGGACATCTGCTCTGGCAGAGGTTCCCAATGTC 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1450 AACTCAGCTTTGATTGGTGGGGAAGGTTGGACGTCTGCTCTGGCAGAGGTTCCCAATGTC 1509
Query 721 ATCGAGAAGGCTTGTACTGGGTCATTAACGTCCCCAAAGGCTAATGCTGTTAGCACGGGA 780
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 1510 ATCGAGAAGGCTTGTACTGGGTCATTAACGTCTCCAAAAGCTAATGCTGTTAGCGCGGGA 1569
Query 781 ACTTTAACTGGAACAACTGGTCTTAACATGGCAGAAGCATTGGTTCAGGCTCCAGCAAGA 840
||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1570 ACTTTAACTGGCCCAAGTGGTCTTAACATGGCTGAAGCATTGGTGCAGGCTCCAGCAAGA 1629
Query 841 AGTCACACCCCTCCCCAAGGATCGGTGAAGACACAACGACTCGAGGACTTGGCAATCAAG 900
| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1630 ACTCACACCCCTCCCCAAGGATCTGTGAAGACACAACGGCTCGAGGATTTGGCAATCAAG 1689
Query 901 CAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGTGCTCGAGTCTGAATTCT 960
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1690 CAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTTGAGTCTGAATTCT 1749
Query 961 TCTGATAAATCCAAGACTAAGCAAGTGGTTCGAACTGGTGAAACTTGTCTTGCTCCCTCA 1020
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1750 TCTGATAAATCCAAGACAAAGCAAGTGGTTCGAACTGGTGAAACTTGCCTTGCTCCCTCA 1809
Query 1021 AGAAATGCCCAACAACAGCCCTCTGTCCTACTTGGGAATTTCCAGTCTAATCCTAGTGGT 1080
|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1810 AGAAATGCCCTACAACAGCCCGCTGTCCTACTTGGGAGTTTCCAGTCTAATCCTAGTGGT 1869
Query 1081 CAAATCAAACCTGAGAAGAAGCTGTTGGTTCTCAAACCGGCTAGGGAAAATGGTGTCAGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 CAAATCAAACCTGAGAAGAAGCTGTTGGTTCTCAAACCGGCTAGGGAAAATGGTGTCAGT 1929
Query 1141 GCTGTTAAAGAATCTGGAAGCCCTAGTGCTAATACAAACACTCGAGCCGCCTCTAGCCAG 1200
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1930 GCTGTTAAAGAATCTGGAAGCCCAAGTGCTAATACAAACACTCGAGCTGCCTCTAGCCAG 1989
Query 1201 CTGATGTCCAATGCTCAATCAACGCAATCTGCTCCTGTGAGAAGTACAAACAGCCCAAAG 1260
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1990 CTGATGTCCAATACTCAATCAACCCAATCTGCTCCTGTGAGAAGTACAAACAGCCCAAAG 2049
Query 1261 GAGCTCAAGGGAGCTAGTGCCTTCTCCATGATATCTGGCCAAACTGTCGAAAAGAAATCT 1320
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2050 GAGCTCAAGGGAGCCAGTGCCTTCTCCATGATATCTGGCCAAACAATCGAAAAGAAACCT 2109
Query 1321 TCCACTGCTCAAACTCAGAGCAGGAGTGCATTTTACAGTGCTCTGAAGCAGaaaaaaaCT 1380
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2110 TCCGCTGCTCAAGCTCAGAGCAGGAGTGCATTTTACAGTGCTCTGAAGCAGAAACAAACT 2169
Query 1381 GCATCAACAAGCATCTCCACCGATCCCGTTAACTCTTCAACCAGTGTCTCTTCTTCTGTT 1440
||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 2170 GCATCAACAAGCATCACCACCGATCCTGTTAGCTCTTCAACCAGTGCCTCTTCTTCTGTT 2229
Query 1441 GAGGGAAAAGTCAACAGCTCTAAGGATCTTATAGCTAGTGACCCTTCAAGTCCACAGGCA 1500
|||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2230 GAGGTAAAACTCAACAGCTCAAAGGATCTTATAGCTAGTGACCCTTCAAGTTCACAGGCA 2289
Query 1501 ACAAGTGG-GCTCAAAGTGACTGAAAGGGTCCAGGTAGCTTCTCATACTAGTGGCTTTGA 1559
|||||||| | || |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2290 ACAAGTGGCG-TCGAAGTGACTGACAGTGTCCAGGTAGCTTCTCATACTAGTGGCTTTGA 2348
Query 1560 AGCAACTGACACTCCAGATGAGGAAGAGGCAGAGTTCCTTAGATCGCTCGGCTGGGATGA 1619
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||
Sbjct 2349 AGCAACTGACACTCCAGATGAGGAAGAGGCACAGTTCCTTAGATCACTCGGCTGGGTTGA 2408
Query 1620 AAACAATGGTGAAGA-TGAAGCTCTCACAGAGGAGGAGATAAAATCCTTTTATG-AACAG 1677
||||||||||||||| | | ||||||||||||||||||| | ||||||| || |||||
Sbjct 2409 AAACAATGGTGAAGAAT-A---TCTCACAGAGGAGGAGATAGATTCCTTTT-TGGAACAG 2463
Query 1678 TACAAGGAGCTGAGGCCGACATTTCCGCAGA-ATCTGTCCATGATACATGAAGCAAGAGA 1736
|||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||
Sbjct 2464 TACAAGGAGCTGAGGCCGTTATTTCCGGAGAGA-CTATCCATGATACATGAAGCAAGAGA 2522
Query 1737 GGATGTAGTTTAA 1749
|||||||| ||||
Sbjct 2523 GGATGTAGCTTAA 2535
> AT4G08510.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G36990.1); Has 888 Blast hits to 321 proteins
in 121 species: Archae - 0; Bacteria - 120; Metazoa - 86;
Fungi - 24; Plants - 79; Viruses - 0; Other Eukaryotes - 579
(source: NCBI BLink). | chr4:5410296-5413453 FORWARD LENGTH=2820
Length=2820
Score = 649 bits (351), Expect = 0.0
Identities = 1081/1413 (77%), Gaps = 132/1413 (9%)
Strand=Plus/Plus
Query 129 TAATAGCAGGAATAGGAACT-CTAGGAGCAAAAGTGACGTTGATTCAATTCATTCTCCTT 187
|||||||| ||||||||| | ||||||||| |||||| | ||||||| || |||||||
Sbjct 826 TAATAGCAAGAATAGGAA-TGCTAGGAGCAGAAGTGATGCTGATTCAGTTGGGTCTCCTT 884
Query 188 TTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCGCTAGTAATGGTTCTGCAAAGC 247
|||| || || |||||||| || ||| | |||||||| |||||||||| ||| |||| |
Sbjct 885 TTCTCGACCGGTCTTCTTCCACCAATACGAGGAGGGGATCTAGTAATGGGTCTACAAAAC 944
Query 248 ATGCATATAGTAGTTTCAACTTTAATAGGAGTCAA-AGGGATAAGGACCGCAGCAGGGAC 306
||||||||||||||||||||||||||||||| ||| || ||||| || || ||||||||
Sbjct 945 ATGCATATAGTAGTTTCAACTTTAATAGGAG-CAACAGAGATAAAGATCGGAGCAGGGAG 1003
Query 307 AAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACCTCTATCCCTCTTAGAAC- 365
||||||||| | ||||| |||||||||||||| ||| | ||||| ||| || ||||
Sbjct 1004 AAGGATAGGATGAGCTACATGGATCCATGGGACAATGATAGTTCTATGCCTTTTGGAACC 1063
Query 366 TATCTTGACTGGTAGGG-ATCCGGATCCATTGAGACGATCACATTCAATGGTAACAAGGA 424
| |||||| |||||||| | ||| ||| |||||||||||||||||||| ||||||||
Sbjct 1064 T-TCTTGATTGGTAGGGGAGA-GGAGCCACTGAGACGATCACATTCAATGACAACAAGGA 1121
Query 425 AACAGGGAGACCACCTGTCTCGAGGATTAACAGTGGGCT-TGAAAAATGGTGGCA-C-TG 481
|||||||| |||| ||| ||| |||||| ||||| || | | ||||||||||| | | |
Sbjct 1122 AACAGGGAAACCATCTGGCTCAAGGATTTACAGTAGGATAT-AAAAATGGTGGAAACAT- 1179
Query 482 GTAATAGTTACAATGGAAACGG-AGTACTCTC-TGGACCTAGCATTGGGAATAGCTTTCA 539
||||| || ||| ||| | || | |||| || |||| ||||| || || |||| ||
Sbjct 1180 -TAATACTTTCAACGGACATGGTA-TACT-TCCTGGAACTAGCCCTGTAAAGAGCTC-CA 1235
Query 540 GA-GAACTGGGTTTGA-TAAGGATTTTCCTTCT-CTTGGAGCTGAAGAGAAGCAAAATGG 596
| ||| ||||||| | |||||||||||||| | ||| ||| |||||||| | ||| |||
Sbjct 1236 AAAGAA-TGGGTTTCAATAAGGATTTTCCTT-TGCTTAGAGGTGAAGAGA-G-AAA-TGG 1290
Query 597 -G-CA-AGATGTTGTACGAGTCTCATCTCCTGTTATAAGTTC-AGCTGTTCAGAACTTAC 652
| | ||| |||||| || |||||||||||| | |||| | | ||| ||||| |||
Sbjct 1291 AGGCCCAGACGTTGTAAGAATCTCATCTCCTGGTCGAAGTCCTA-CTGCTCAGAGCTTGT 1349
Query 653 CAGTTGGTAACTC-AGCTTTGATTGGT-GGGGAAGGTTGGACATCTGCTCTGGCAGAGGT 710
|||||| ||| || ||| |||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1350 CAGTTGCTAA-TCCAGCCTTGATTA-TCGGGGAAGGTTGGACATCGGCTCTGGCAGAGGT 1407
Query 711 TCCCAATGTCATCGAGAAG-GCTTGTACTGGGTCATTAACGTCCCCAAAGGCTAATGCTG 769
||||||||| || |||||| | | || || | | || |||| | | |||||| ||
Sbjct 1408 TCCCAATGTTATTGAGAAGAG-TGGTGGTG---C-TGAA--TCCC-AT-G-CTAATG-TG 1456
Query 770 T-TAGCACGGGAACTTTAACTGGAACAACTGGTCTTAACATGGCAGAAGCATTGGTTCAG 828
|| ||| || ||| ||||| || || ||| ||||||||| ||||||||||| |||
Sbjct 1457 GGTAATTCGGCTACCTTATCTGGACCAGCTTGTCGTAACATGGCTGAAGCATTGGTGCAG 1516
Query 829 GCTCCAGCAAGAAGTCACACCCCTCCCCAAGGATCGGTGAAGACACAACGACTCGAGGAC 888
||||||| ||||| | || || ||||| || | | || ||| ||| ||||||
Sbjct 1517 GCTCCAGGAAGAACTGGTACACCACCCCA-GG--C----A---CA-AAC-ACTTGAGGAC 1564
Query 889 TTG-GCAATCAAGCAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGTGCTC 947
| || || | ||| || ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1565 C-GAGCTATTAGGCAATCTAGGCAGTTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTC 1623
Query 948 GAGT-C-TGAATTCTTCTGATAAATCCAAGACTAAGC-AAGTGGTTCGAACTGGTGAAAC 1004
||| | | || |||||||||||||||||||| || | || || |||||| |||||||||
Sbjct 1624 -AGTTCAT-AACTCTTCTGATAAATCCAAGACCAAACCAA-TGTTTCGAAGTGGTGAAAC 1680
Query 1005 TTGTCTTGCTCCCTCAAGAAATGCCCAACAACAGCCCTCTGTCCTACTTGGGAATTTCCA 1064
|||||||| | ||||||||| ||||||| ||| ||||||| | || || ||| | ||
Sbjct 1681 CGGTCTTGCTTCTTCAAGAAATACCCAACAGCAGTCCTCTGTGATGCTCGGTAATATGCA 1740
Query 1065 GTCTAATCCTAGTGGTCAAATCAAACCTGA---GA--A-GAAGCTGTTGGTTCTCAAACC 1118
|||||||||| || |||| ||||| ||||| || | ||||||| || ||||||||||
Sbjct 1741 GTCTAATCCTGGTAGTCAGATCAAGCCTGATACGACTAAGAAGCTGGTGATTCTCAAACC 1800
Query 1119 GGCTAGGGAAAATGGTGTCAGT-GCTGTTAAAGAATCTGGAAGCCCTAGTGCTAATACAA 1177
|||||||||||||| || ||| |||| | | || | || | | || ||
Sbjct 1801 TGCTAGGGAAAATGGGGT-AGTTGCTGG-AG-GT-TC---A--CC--ACC-C-AA--CAG 1845
Query 1178 ACACTCGAGCCGCCTCTAGCCAGCTGATGTCCAATGCTCAATCAACGCAAT---CTGCTC 1234
| | ||| ||| ||||||||| || ||| ||| | ||| || |||| |||||
Sbjct 1846 -C-C--GAGTTGCCGCTAGCCAGCCGA---CCACTGCCCCATCCACACAATTTACTGCTT 1898
Query 1235 CTGTGAGAAGTACAAACAGCCCAAAGGAGCTCAAGGGAGCTAGTGCCTTCTCCATGATAT 1294
|||||||||| ||||| | |||| ||| |||| ||||||| || | | ||| ||
Sbjct 1899 CTGTGAGAAGCACAAATGGTCCAAGGGATCTCAGGGGAGCTTCTG--TAAAC-ATGTTAG 1955
Query 1295 CTGGCCAAA-CTG-TCGAAAAGAAATCTTCCACT-G-CTCAAACTCAGAGCAGG-AGTGC 1349
|||| ||| | | | ||||||||| ||| | || | ||||||||||||||||| | |||
Sbjct 1956 CTGGA-AAAGCCGCT-GAAAAGAAA-CTTTC-CTTGGCTCAAACTCAGAGCAGGCA-TGC 2010
Query 1350 ATTTTACAGTGCTCTGAAGCAGaaaaaaaCTGCATCAACAAGCATCTCCACCGATCCCGT 1409
||||||||||||| ||||||| ||||| | || | | | | |||||| || ||||| |
Sbjct 2011 ATTTTACAGTGCTTTGAAGCA-AAAAACA-TGTA-CGA-A--CATCTCAACTGATCCA-T 2063
Query 1410 TAACT-CTTCAAC-CAGTGTC-TCTT--CTTCTGTTGAGGGAAAAGTCAA-CAGCTCTAA 1463
|| | || | | || | |||| |||| || |||| || || ||| ||| |||||
Sbjct 2064 CAAAAAC--CAGCTCT-TG-CATCTTGTCTTCAGTGGAGG-AACAGGCAAACAGTTCTAA 2118
Query 1464 GGATCTTATAGCTAGTGACCCTTCAAGTCCACA 1496
||| ||| |||||||||||||||||||||||||
Sbjct 2119 GGAGCTTGTAGCTAGTGACCCTTCAAGTCCACA 2151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5