BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913525
Length=2814
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42540.1 | Symbols: ATGLR3.3, GLR3.3 | glutamate receptor 3.... 3995 0.0
> AT1G42540.1 | Symbols: ATGLR3.3, GLR3.3 | glutamate receptor
3.3 | chr1:15973054-15976703 FORWARD LENGTH=3051
Length=3051
Score = 3995 bits (2163), Expect = 0.0
Identities = 2606/2821 (92%), Gaps = 26/2821 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCAACTCTGGGCTTTGTTGTTCTTGTCTTGCCTTTGTACTGGATTGTTCACAA-A 59
||||||||||||||| |||| || |||||||||| |||||||| ||||||||||| || |
Sbjct 250 ATGAAGCAACTCTGGACTTTCTTCTTCTTGTCTTTCCTTTGTAGTGGATTGTTCAGAAGA 309
Query 60 AGCACATTCTGAGAAACCAAAAGTTGTGAAAATCGGTTCTATATTCAGTTTTGATTCAGT 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 A-CACATTCTGAGAAACCAAAAGTTGTGAAAATCGGTTCTATATTCAGTTTTGATTCAGT 368
Query 120 GATCGGCAAAGTTGCTAAGATTGCTATTGATGAGGCAGTGAAAGATGTGAATTCAAACCC 179
|| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 369 TATTGGCAAAGTTGCTAAGATCGCTATTGATGAAGCAGTAAAAGATGTGAATTCAAATCC 428
Query 180 AGACATTCTCAGAGGAACAAAGCTTTCTGTTTCGATGCAAAACTCTAATTGCAGCGGTTT 239
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 429 AGACATTCTCAGCGGAACAAAGTTTTCTGTTTCGATGCAAAACTCTAACTGCAGCGGTTT 488
Query 240 TATGGGCATGGTTGAAGCATTGCGGTTTATGGAGAAGGATATAGTTGGGATTATAGGACC 299
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 489 TATGGGCATGGTTGAAGCATTGAGGTTTATGGAGAAAGATATAGTTGGGATTATAGGACC 548
Query 300 ACAATGTTCTGTAGTTGCTCATATGATATCTCATATGGCAAACGAACTTCATGTGCCTCT 359
||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| || ||
Sbjct 549 ACAATGTTCTGTAGTAGCTCATATGATATCTCATATGGCTAACGAACTTCGTGTACCGCT 608
Query 360 TCTTTCGTTTGCTGTTACGGATCCTGTAATGTCGCCGTTACAGTTTCCGTATTTTATTAG 419
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 609 TCTTTCGTTTGCTGTAACCGATCCCGTAATGTCGCCGTTACAGTTTCCGTATTTCATTAG 668
Query 420 GACGACTCAGAGCGATTTATATCAGATGGATGCTATTGCTTCTATTGTTGATTTCTATGG 479
||| |||||||| ||||||||||| |||||||| || || || ||||| ||||| |||||
Sbjct 669 GACTACTCAGAGTGATTTATATCAAATGGATGCAATAGCATCCATTGTAGATTTTTATGG 728
Query 480 TTGGAAAGAAGTAATTGCTGTGTTTGTGGATGATGATTTCGGAAGGAATGGTGTGGCTGC 539
|||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 729 TTGGAAAGAAGTTATTGCTGTGTTTGTTGATGATGATTTCGGTAGGAACGGTGTTGCTGC 788
Query 540 GTTGAACGATAAGCTTGCGAGTAGGAGATTGAGAATTACTTATAAGGCTGGTTTACATCC 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 789 GTTGAACGATAAGCTTGCGAGTAGGAGATTGAGAATTACTTATAAGGCGGGTTTACATCC 848
Query 600 CGATACCGCTGTGGATAAGAACGAGATCATGAACATGCTAATCAAGATCATGTTGCTTCA 659
|| || ||||| ||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 849 TGACACGGCTGTTAATAAGAATGAGATCATGAACATGCTGATAAAGATCATGTTGCTTCA 908
Query 660 GCCGAGGATTATTGTGATACATGTTTACTCGGAATTGGGTTTTGCGGTTTTTAAGGAGGC 719
||||||||| |||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 909 ACCGAGGATTGTTGTGATACATGTTTATTCGGAGTTGGGGTTCGCGGTTTTTAAGGAGGC 968
Query 720 TAAGTATCTTGGAATGATGGGAAATGGGTATGTTTGGATCGCTACGGATTGGCTCTCCAC 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 969 TAAGTATCTTGGAATGATGGGAAATGGATATGTTTGGATCGCTACGGATTGGCTCTCTAC 1028
Query 780 GAATCTTGACTCTTCCTCTCTGCTACCCGCTGAGCGATTGGAAACTATTCAAGGTGTTCT 839
||||||||||||||| || | | ||||||||||| | |||||||||||||||||||||||
Sbjct 1029 GAATCTTGACTCTTCTTCGCCGTTACCCGCTGAGAGGTTGGAAACTATTCAAGGTGTTCT 1088
Query 840 TGTTTTGCGTCCGCACACGCCTGATTCTAG-TTTGAAACGGGAGTTTTTCAAGAGGTGGC 898
|||| ||||||| |||||||| ||||| | ||| |||||||||||||||||||||||||
Sbjct 1089 TGTTCTGCGTCCACACACGCCGGATTC-GGATTTTAAACGGGAGTTTTTCAAGAGGTGGC 1147
Query 899 GTAAGGTTTCCGGTGCTTCTTTGGCTCTTAACACATATGCTCTATATGCTTATGATTCTG 958
||||| | || |||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1148 GTAAGATGTCTGGTGCTTCTTTGGCTCTTAATACATATGGACTCTATGCTTATGATTCTG 1207
Query 959 TTATGCTT-TTAGCGCGTGGTTTAGATAAGTTCTTCAAAGACGGTGGGAAAATATCGTTT 1017
||||| || ||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1208 TTATG-TTGTTAGCCCGGGGTTTAGATAAGTTCTTTAAAGACGGTGGGAATATATCGTTT 1266
Query 1018 TCTAATCACTCAATGCTTAATAC-TCTGGGAAAGAGCGGAAATCTCAATC-TCGAAGCAA 1075
|| |||||||||||||| ||||| | ||||||| |||||||||||||| | | || || |
Sbjct 1267 TCGAATCACTCAATGCTCAATACGT-TGGGAAAAAGCGGAAATCTCAA-CTTAGAGGCTA 1324
Query 1076 TGACCGTCTTTGATGGTGGAGAAACTCTGCTTAAGGATATCCTCGGAACGCGTATGGTTG 1135
|||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1325 TGACTGTCTTTGATGGTGGAGAAGCACTGCTTAAAGATATCCTCGGAACGCGTATGGTTG 1384
Query 1136 GTTTAACAGGACAGCTTCAGTTCACTCCGGACAGGTCTCGGACCCGTCCAGCTTATGATA 1195
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1385 GTTTAACGGGACAGCTTCAGTTCACTCCAGACAGGTCTCGGACCCGTCCAGCTTACGATA 1444
Query 1196 TTATCAATGTGGCCGGAACCGGTGTTCGCCAAATAGGCTACTGGTCAAATCATTCTGGTT 1255
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1445 TTATCAATGTGGCGGGAACCGGTGTTCGTCAAATAGGCTACTGGTCAAATCATTCTGGTT 1504
Query 1256 TATCAACCGTATCACCCGAGTCACTCTATACAAAGGAGCAACCAAATATGTCTTCTGGTA 1315
||||||| |||| ||| |||| |||||| ||||||||| ||||||||| | ||
Sbjct 1505 TATCAACTGTATTACCTGAGTTACTCTACACAAAGGAGAAACCAAATA-------T-GT- 1555
Query 1316 CAACAAGTCCGAAACTAAGGCATGTGATTTGGCCGGGAGAAACATTTACAAAACCTCGCG 1375
|||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1556 CAACAAGTCCGAAACTAAAGCATGTCATTTGGCCGGGAGAAACGTTTACGAAACCTCGCG 1615
Query 1376 GATGGGTTTTCTCTAACAATGGTAAAGAACTCAAGATTGGCGTGCCTCGCCGCGTCAGTT 1435
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1616 GATGGGTTTTCTCTAACAATGGGAAAGAACTCAAGATTGGCGTGCCTCTTCGCGTTAGTT 1675
Query 1436 ACAAGGAGTTTGTATCACAAATTCGTGGAACCGAGAATATATTCAAAGGGTTCTGCATTG 1495
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 1676 ACAAGGAGTTTGTATCACAAATTCGCGGAACCGAGAACATGTTCAAAGGGTTTTGCATTG 1735
Query 1496 ATGTCTTCACAGCTGCAGTGAACCTTTTACCTTACGCAGTCCCTGTCAAGTTTATTCCTT 1555
|||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1736 ATGTCTTCACGGCTGCAGTGAATCTTTTACCGTACGCAGTTCCTGTCAAGTTTATTCCTT 1795
Query 1556 ATGGAAACGGAAAGGAGAATCCGAGCTACACGCATATGGTTGAGATGATAACAACTGGTA 1615
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 ATGGAAATGGAAAGGAGAATCCGAGCTACACGCATATGGTTGAGATGATAACAACTGGTA 1855
Query 1616 ATTTTGATGGGGTAGTAGGTGATGTTGCCATTGTAACAAACCGGACAAAGATTGTAGATT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 ATTTTGATGGGGTAGTAGGTGATGTTGCCATTGTAACAAACCGGACAAAGATTGTAGATT 1915
Query 1676 TCACACAACCGTATGCAGCATCTGGACTAGTTGTTGTTGCTCCTTTTAAAAAACTGAATT 1735
|||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 1916 TCACACAACCATATGCAGCATCAGGACTAGTTGTAGTTGCACCTTTTAAAAAACTGAATT 1975
Query 1736 CAGGAGCTTGGGCTTTTCTTCGACCTTTCAATCGACTTATGTGGGCAGTCACGGGTTGTT 1795
||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1976 CAGGAGCCTGGGCTTTTCTTCGACCTTTCAACCGTCTTATGTGGGCTGTCACGGGTTGTT 2035
Query 1796 GTTTTCTCTTTGTTGGCATTGTTGTTTGGATCTTGGAACATAGGACTAACGATGAATTCA 1855
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 GCTTTCTCTTTGTTGGCATTGTTGTTTGGATCTTGGAACATAGGACTAACGATGAATTCA 2095
Query 1856 GAGGCCCGCCGAAGAGACAATGCGTCACAATTCTTTGGTTTAGCTTCTCGACCATGTTTT 1915
||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2096 GAGGCCCACCTAAGAGACAATGTGTCACAATTCTCTGGTTTAGCTTCTCGACCATGTTTT 2155
Query 1916 TCGCGCATAGAGAGAACACAGTTAGTACACTTGGGCGGTTGGTTCTGATCATATGGCTAT 1975
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2156 TCGCGCATAGAGAGAACACAGTTAGTACACTTGGACGGTTGGTTCTGATCATATGGCTAT 2215
Query 1976 TCGTTGTACTAATTATCAACTCGAGCTACACGGCTAGTCTGACATCGAT-TCTGACGGTT 2034
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2216 TCGTTGTACTAATCATCAACTCGAGCTACACGGCTAGTCTGACATCGATAT-TGACGGTT 2274
Query 2035 CAGCAGCTCTCATCCCCCATCAAGGGAATTGAAAGCCTTAGAGAAAGGGATGATCCGATC 2094
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2275 CAGCAGCTCTCTTCACCCATCAAGGGAATTGAAAGCCTTAGAGAAAGAGATGATCCAATA 2334
Query 2095 GGGTACCAGGTGGGTTCGTTTGCAGAGAGTTATTTGAGGAATGAACTTAACATATCAGAG 2154
||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2335 GGGTACCAGGTTGGTTCATTTGCAGAGAGTTATTTGAGGAACGAACTCAACATATCAGAG 2394
Query 2155 TCACGGCTCGTCCCACTTGGAACACCTGAAGCCTATGCCAAGGCTTTAAAAGATGGACCA 2214
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2395 TCACGCCTAGTCCCACTTGGAACACCTGAAGCCTATGCTAAGGCATTAAAAGATGGACCA 2454
Query 2215 AGCAAAGGAGGTGTTGCTGC-AGTTGTTGACGAGCGTCCCTATATAGAACTCTTCCTCTC 2273
||||||||||| ||||| || | |||||||||| ||||| ||| | ||||||||||||||
Sbjct 2455 AGCAAAGGAGGCGTTGCCGCGA-TTGTTGACGAACGTCCTTATGTCGAACTCTTCCTCTC 2513
Query 2274 CAGCAACTGCGCCTATAGGATCGTCGGTCAGGAGTTCACCAAAAGCGGCTGGGGATTTGC 2333
|||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2514 CAGCAACTGCGCTTATAGAATCGTTGGTCAAGAGTTCACCAAAAGTGGCTGGGGATTTGC 2573
Query 2334 ATTTCCTAGAGACTCTCCTCTTGCAATAGATCTATCAACAGCGATCTTAGAGCTGGCAGA 2393
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2574 CTTTCCTAGAGACTCTCCTCTAGCAATAGATCTATCAACAGCGATCTTAGAGCTAGCAGA 2633
Query 2394 AAACGGAGATTTGCAGAGGATCCACGACAAATGGCTAATGAAGAACGCATGCTCTCTGGA 2453
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2634 GAACGGAGATTTGCAAAGGATCCACGACAAATGGCTAATGAAGAACGCATGCACTCTAGA 2693
Query 2454 GAATGCGGAGCTTGAATCAGACAGGCTTCACCTAAAGAGCTTCTGGGGACTGTTTCTCAT 2513
||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 2694 GAACGCGGAGCTCGAATCAGACAGGCTTCATCTAAAAAGCTTTTGGGGACTATTTCTCAT 2753
Query 2514 ATGCGGTGTTGCGTGCCTCCTCGCTCTCTTCCTATACTTTGTTCAGATCATCCGTCAGCT 2573
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2754 ATGCGGCGTCGCGTGCCTCCTCGCTCTCTTCCTATACTTTGTTCAGATCATCCGTCAGCT 2813
Query 2574 CTATAAAAAGCCAAGCGATGATGCCATTGCAAGAGATCAGCAGCAGAATCATGTCTCCTC 2633
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 2814 CTATAAAAAGCCAACCGATGATGCCATTGCAAGAGATCAACAGCAGAATCATGACTCTTC 2873
Query 2634 CTCCATGCGTTCCACTCGTCTGCAAAGATTCTTGTCCCTCATGGATGAGAAAGAAGAGTC 2693
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2874 CTCCATGCGCTCCACTCGTTTGCAAAGATTCTTGTCTCTCATGGATGAGAAAGAAGAGTC 2933
Query 2694 CAAGCCCGGAAGCAAGAAGAGAAAGATCGATGGATCAATGAACGATGCTTCAGCAGGATC 2753
||||| || |||||||||||||||||||||||| |||||||||||| | || | |||||
Sbjct 2934 CAAGCACGAAAGCAAGAAGAGAAAGATCGATGGTTCAATGAACGATACATC-G--GGATC 2990
Query 2754 GACACGATCACGAGGATTCGACAGAGAAAGAAGCCTCAATTCGGTAAACCCATTAGATTG 2813
|||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| ||
Sbjct 2991 AACACGATCACGAGGTTTCGATAGAGAAAGAAGCTTCAATTCGGTAAATCCATTAGACTG 3050
Query 2814 A 2814
|
Sbjct 3051 A 3051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139815270141
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5