BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913657
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1188 0.0
> AT1G44920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3054 (InterPro:IPR021414);
Has 246 Blast hits to 246 proteins in 119 species: Archae
- 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants -
45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
| chr1:16982904-16984419 REVERSE LENGTH=1113
Length=1113
Score = 1188 bits (643), Expect = 0.0
Identities = 735/780 (94%), Gaps = 3/780 (0%)
Strand=Plus/Plus
Query 1 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAAATTCATCACC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 12 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAGATTCATCACC 71
Query 61 AAATCCAAACCTTCTGCTTTCTCTAGTCCCGATTCATGGCTCGTCCCCGCTCCAAACACT 120
||||||||||||||| |||||||| |||||||||||||||| |||| || |||||||||
Sbjct 72 AAATCCAAACCTTCTCCTTTCTCTTCTCCCGATTCATGGCTCCTCCCTGCACCAAACACT 131
Query 121 CGCCGGAGACGGCAACGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAAGTCC 180
| |||||| || | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 132 CACCGGAGTCGTCCCCGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAACTCA 191
Query 181 AAACCCTCAACCTCAGTTTCTCAAATCCCGTCTTCAGGAGATGACACAGTTTTCGTGGGT 240
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 192 AAACCCTCAACCTCAGCTTCTCAAATCCCTTCTTCAGGAGATGAAACAGTTTTCGTGGGT 251
Query 241 CAAGAGAATGTTCCTCTCGAGGGTGTGATTCAGTTCGATAAACCATCATCATCTACTTCA 300
||||| ||||||||||||||||| |||||||| ||||||||| | | ||||||||||||
Sbjct 252 CAAGATAATGTTCCTCTCGAGGGCGTGATTCAATTCGATAAA-C--CGTCATCTACTTCA 308
Query 301 TCTTCTAACATTACCAAATGGGGTCGTGTTGCGTTACTTGCTGGTGGTGATGTTTTGGCT 360
||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||
Sbjct 309 TCTTCTAACATTACCAAATGGGGTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCT 368
Query 361 CTGCTTATCTTCTCTGCAATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTATTGAT 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 369 CTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGAT 428
Query 421 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCATATTTCTTGGGG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCTTATTTCTTGGGG 488
Query 481 GGTTATGCGGAGGAAGGGCGAGGAATGAAGGGTCGGTCTAAAGCTGTGGTTGCAGCTGCC 540
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 489 GGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCG 548
Query 541 AAATCTTGGATTGTCGGAGCTCCGCTTGGAATTATCATTAGATCAGCTTCATCGGGTCAC 600
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 549 AAATCTTGGATTGTCGGAACTCCGCTTGGAATTATCATTAGGTCAGCTTCATCAGGTCAC 608
Query 601 ATTCCGGCTTCTAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATCGGA 660
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 609 ATTCCGGCATATAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATAGGA 668
Query 661 TGGAGAGCATTGTTATTCAGTGTGCTTCCAACAGAGTCCAAGAAGAAAGATGATACGTAT 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 TGGAGAGCATTGTTATTCAGTGTGCTTCCTACAGAGTCCAAGAAGAAAGATGATACGTAT 728
Query 721 CGGAAGGGCAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGGTGGTGA 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 729 CGGAAGGGTAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGATGGTGA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5