BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913857
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1367 0.0
> AT1G48300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast
hits to 87 proteins in 37 species: Archae - 0; Bacteria -
2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink). | chr1:17847356-17848564
FORWARD LENGTH=1119
Length=1119
Score = 1367 bits (740), Expect = 0.0
Identities = 844/895 (94%), Gaps = 4/895 (0%)
Strand=Plus/Plus
Query 191 CGAGATGCGGCgaggagaaagaaaaggttaaggttatggagaaggagaagaaagcgttga 250
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1 CGAGATGCGGCGAGGAGAAAGAGAAGGTTAAGGTTATGGAGAAGGAGAAGAAGGCGTTGA 60
Query 251 aaaagaaggc-aaaggttCTTAAAAGTCTTTCTAAGAACTTGAATATGTTCTCAAGTATA 309
| |||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 AGAAGAAGGCGAAA-GTTCTTAAAAGTCTTTCTAAGAACTTGGATATGTTCTCTAGTATA 119
Query 310 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGGTTCAGACCAAGACAATCTCG 369
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGATTCAGACCAAGACAATCTCG 179
Query 370 GAAGCAACAGAGATATTGGTTAAGCAGCTAGAGCAGTTGAAAGCAGAGGAGAAGCTGTTG 429
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 180 GAAGCTACAGAGATATTGGTTAAGCAGCTGGAGCAGTTGAAAGCAGAGGAGAAGATATTG 239
Query 430 AAGAAACAGAGGAAAGAAGAGATGGCAAAAGCCAAAGCTATGAAGAAGATGACTGAAATG 489
|||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 240 AAGAAACAGAGGAAAGAAGAGAAGGCTAAAGCCAAAGCCATGAAGAAGATGACTGAAATG 299
Query 490 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGACAGTGATTGTGATAAAGGCAAAGTT 549
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGATAGTGATTGTGATAAAGGCAAAGTT 359
Query 550 GTTGACATGAGCTCTCTCAGAAACAAGGCTAAACCGATTCTTGAGCCGTTACAACCAGAA 609
|| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GTGGACATGAGCTCTTTAAGAAACAAGGCTAAACCGGTTCTTGAGCCGTTACAACCAGAA 419
Query 610 GCCACAGTAGCAACCCTTCCTAGAATCCAAGAAGATGCACAAT-CTTGCAAGAACACCAG 668
||||||||||||||||||||||| |||||||| |||||| | | ||||||||||||||||
Sbjct 420 GCCACAGTAGCAACCCTTCCTAGGATCCAAGAGGATGCA-ATTTCTTGCAAGAACACCAG 478
Query 669 TGAAGCATTGCAGATTGCTCTGCAAACATCCACTGTCTTTCCCTCAATGGGCAATCCTGG 728
||||||||||||||||||||| ||||||||||| | ||||| ||||||| |||||||||
Sbjct 479 TGAAGCATTGCAGATTGCTCTACAAACATCCACAATTTTTCCTTCAATGGCCAATCCTGG 538
Query 729 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTGCCTTTGAAGAGAGTAGA 788
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 539 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTACCATTGAATAGAGTAGA 598
Query 789 AGTGTGTATGGGAGGGAAGTGTAAGAAATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 848
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 AGTGTGTATGGGAGGGAAGTGTAAGAGATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 658
Query 849 AAGGGCGATGACGGGTTTCGAAGGTTCCGCTGTGGCTTGCAAGTGCATGGGAAAGTGTCG 908
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 659 AAGGGCGATGACGGGTTTCGAAGGATCTGCTGTGGCTTGCAAGTGCATGGGGAAGTGTCG 718
Query 909 TGATGGTCCAAACGTTAGAGTCGTCAACGAGACTGATACTGTGATGACTGATTCAGTTAG 968
|||||| |||||||||||||| || || ||||||||| ||||||||||||||||||||||
Sbjct 719 TGATGGCCCAAACGTTAGAGTTGTGAAGGAGACTGATGCTGTGATGACTGATTCAGTTAG 778
Query 969 GACACCGTCCAAGACCGTTTGCGTAGGAGTTGGATTACAGGATGTGGAAACTATTGTGAC 1028
|||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 779 GACACCATCCAAGACCCTTTGTGTAGGAGTTGGATTGCAGGATGTGGAAACTATTGTGAC 838
Query 1029 AAGTTTCTTTGATGAAGAATGTAGCAGGGAGGGACTCGGTTATGTCTCACATTGA 1083
||||||||||||||||||||||||||| || |||||||||| ||||||| |||||
Sbjct 839 AAGTTTCTTTGATGAAGAATGTAGCAGAGAAGGACTCGGTTCTGTCTCATATTGA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5