BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914474
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15450.1 | Symbols: | Aluminium induced protein with YGL an... 719 0.0
> AT3G15450.1 | Symbols: | Aluminium induced protein with YGL
and LRDR motifs | chr3:5212984-5214121 FORWARD LENGTH=951
Length=951
Score = 719 bits (389), Expect = 0.0
Identities = 649/771 (84%), Gaps = 32/771 (4%)
Strand=Plus/Plus
Query 1 ATGTTGGCTATTTTTCA-AAAGACGTTTGTTCATCCACCGGAAGAACTAAACAGTCCGGC 59
|||||||| || ||||| |||| | |||| ||| |||||||||||||| |||||||||||
Sbjct 67 ATGTTGGCAATATTTCAGAAAG-CTTTTGCTCACCCACCGGAAGAACTCAACAGTCCGGC 125
Query 60 GTCTAATTTCACCGGCGAAAAC-CCTAAACTTCCGGGAGAAACTCTCTCTGACTTCCTTT 118
||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||| |
Sbjct 126 TTCTCATTTCTCCGGC-AAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGACTTCCTCT 184
Query 119 CTCACCACCCCGACACTGCTTTCTCAATGAACTTCGGTGACTCCGCTGTTCTT-GCTTTC 177
|||| |||| ||| ||||||||| ||||||||||| |||||||| | |||| |||| |
Sbjct 185 CTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCG-TCTTAGCTTAC 243
Query 178 GTC-CGTTC-ACAAAACTCTCATCATCAAAGAG-TGTT-TAGTGGAATCGATGGAATCTA 233
| | || | | ||| ||||| || |||||| | |||| | ||||| | ||||| |||||
Sbjct 244 G-CTCG-CCAAGAAACCTCTCTTCGTCAAAG-GTTGTTCT-GTGGACTAGATGGGATCTA 299
Query 234 CTGTGTGTTTCT-TGGAGCATTGAACAATCTCTGCA-ATTTGAA-CAAACAATACGGTTT 290
|||| ||||||| |||| |||||| |||||||| | | ||||| | ||||||||||||
Sbjct 300 CTGTATGTTTCTAGGGAG-ATTGAATAATCTCTGTACA-TTGAATC-GACAATACGGTTT 356
Query 291 ATCT-GGAAAAACTTCAAACGAAGCTATGTTTGTTATCGAAGCTTATCGAACACTTCGTG 349
|||| |||| ||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 357 ATCTGGGAAGAAC-TCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTG 415
Query 350 ATCGTGGTCCTTATCCAGCTGATCAAGTTCTTAGAGGTCTTGACGGAAGTTTTGCTTTTG 409
||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| |
Sbjct 416 ATCGTGGTCCTTACCCAGCAGATCAAGTTCTTAGAGGTCTTGAGGGAAGCTTCGCTTTCG 475
Query 410 TCGTCTATGATACTCAAACCTCCTCTGTTTT-TGCAGCTCTGGGATCTGATGGAGAAGAG 468
| ||||| ||||||||||| ||||||||||| | |||||||| | |||||||||| ||||
Sbjct 476 TTGTCTACGATACTCAAACTTCCTCTGTTTTCT-CAGCTCTGAGTTCTGATGGAGGAGAG 534
Query 469 AGT-TTGTATTGGGGAATAGCTGCAGATGGATCTGTTGTTATGTCTGATGATATTAAGAT 527
||| || || |||||||| ||| ||| ||||||||||| ||||||||||||||| ||||
Sbjct 535 AGTCTT-TACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGAT 593
Query 528 CATTAAGCAAAGTTGTGCGAAATCGTTCGCGCCTTTTCC-AACCGGTTGTATGTTTCATA 586
||| |||||| | ||||| |||||||| || ||||| || || || |||||||||||||
Sbjct 594 CATAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAAT-GGATGTATGTTTCATA 652
Query 587 GTGAGACTGGT-TTGATGAGTTTTGAGCATCCGAAAAACAAGATGAAGGCGATGCCGAGG 645
||||||| || || | ||| ||||| ||||||| || | ||||||||| |||||||||
Sbjct 653 GTGAGACAGGGCTTAA-GAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGG 711
Query 646 ATTGATAGTGAAGGAGTTATATGTGGAGCTAACTTT-AAAGTTGATGCTTGTTCAAAGAT 704
|||||||||||||| ||| | |||||||||| ||| ||||||||||||||||| |||||
Sbjct 712 ATTGATAGTGAAGGTGTTCTTTGTGGAGCTAG-TTTCAAAGTTGATGCTTGTTCTAAGAT 770
Query 705 CAATAGCATTCCAAGAAGAGGAAGTGAAGCTAATTGGTCTCTAGCGAATTC 755
|||||| || || |||||||||||||||||||| ||| | || || |||||
Sbjct 771 CAATAGTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTC 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5