BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914489
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19... 3563 0.0
AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-517... 893 0.0
> AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19786902
FORWARD LENGTH=2690
Length=2690
Score = 3563 bits (1929), Expect = 0.0
Identities = 2247/2395 (94%), Gaps = 44/2395 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGGTTCTTCAGAATCTAATTCCAGAGGATTAAACAACACATCTGGTGTTTCAGAG 60
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 94 ATGAAGGGTTCTTCAGAATCTAGTTCCAGAGGATTAAACAACACCTCTGGTGTTTCAGAG 153
Query 61 TTTTGTACTGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TTTTGTACAGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 213
Query 121 TCACACAAAGAAGATAACTTGGTTGGACTTGATGATGACTCTATTGTTAGAGCTTTGGAA 180
||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 214 TCACATAAAGAAGCTAACTTGGGAGGACTTGATGATGACTCTATTGTCAGAGCTTTGGAA 273
Query 181 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCGGACCGATCCGTTGATGCCTTT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 274 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCAGACCGATCCGTTGATGCCTTT 333
Query 241 GAGTGTTTTCACGTTTTCAGACAGATTGTTGAGATTGTGAATGCAGCTCACTCCCAAGGC 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 334 GAGTGTTTTCATGTTTTCAGACAGATTGTTGAGATTGTTAATGCAGCTCACTCTCAAGGC 393
Query 301 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACCATGTTTCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 394 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACAATGTTTCG 453
Query 361 TTTATCGAATCCGCTTCATGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TTTATCGAATCCGCTTCTTGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 513
Query 421 CGAGAGATTGGTAGCTCGAGAAAAGATGAGTTTCTAT--------------------C-A 459
||||||||||||||||||||| |||| ||| |||||| | |
Sbjct 514 CGAGAGATTGGTAGCTCGAGACAAGAGGAGATTCTATCAGAGAGACGAAGCAAACAACAA 573
Query 460 GAGGAAGTAACGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 519
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 633
Query 520 TACACAAGTCCTGAAGAAGATAATGGTTCTCCGAGTAATTGTGCTTCTGATGTTTATCGT 579
|| ||||||| |||||||||||||||||||| | ||||||||||||||||| |||| |||
Sbjct 634 TATACAAGTCATGAAGAAGATAATGGTTCTCTGTGTAATTGTGCTTCTGATATTTACCGT 693
Query 580 CTTGGTGTTCTTCTCTTTGAGCTATTTTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 639
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 CTTGGTGTTCTTCTCTTTGAGCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 753
Query 640 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCACCTCAGATATTGCTCAATAGGCCTAAA 699
|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct 754 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAA 813
Query 700 GAAGCTTCCTTTTGCCTGTGGTTACTGCATCCTGAGCCTAGCTATCGACCATCGATGAGT 759
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 814 GAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGT 873
Query 760 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGCGAAGCT 819
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 874 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGTGAAGCT 933
Query 820 GCGATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTGCTTGAGTTCTTGTTTCTG 879
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 934 GCAATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTACTCGAGTTCTTGTTTCTG 993
Query 880 ATTCAACAGAGAAAACAAGAAGCTGCAGACAAATTGCGGGATACGATATCGCTTCTTTCT 939
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 994 ATTCAACAGAGGAAACAAGAAGCTGCAGACAAATTGCAGGATACAATATCGCTTCTCTCT 1053
Query 940 TCTGATATTGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGTGATGTC 999
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1054 TCTGATATCGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGAGATGTC 1113
Query 1000 CGTTCGTTTTTGGCCTCAAGAAAACGGATTAGACAAGGAGTTGAGA-CAGCTGCGGCAAA 1058
|||||||| || |||||||||||||||||||||||||||| ||||| || |||| ||| |
Sbjct 1114 CGTTCGTTCTTAGCCTCAAGAAAACGGATTAGACAAGGAGCTGAGACCA-CTGCAGCAGA 1172
Query 1059 GGAAG-AAA--ATG---AT-G-A--G--GAGGAATCTAAGCTTGATGATACTCTAGAAAG 1106
||||| ||| ||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 1173 GGAAGAAAATGATGATAATAGCATTGATGAGGAATCTAAGCTTGATGATACTCTAGAAAG 1232
Query 1107 TACACTACTTGAAAGCTCTCGGTTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1166
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TACACTTCTTGAAAGCTCTAGATTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1292
Query 1167 TGCAATGCGGTACAGACAGATTAAGGCTGCTGCTGCTGCTGAAAAACCGTTGGCTAGATA 1226
||||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1293 TGCAACACGATACAGACAAATCAAGGCTGCTACTGCTGCTGAAAAACCGTTGGCTAGATA 1352
Query 1227 TTATTCGGCATTGAGTAGTAATGGTAGAAGTTCAGAAAAAAGTTCAATGAGCAGCCCGAC 1286
|||||||||||||||| |||| ||||||||||||||||| |||||||| | || || |
Sbjct 1353 TTATTCGGCATTGAGTTGTAACGGTAGAAGTTCAGAAAAGAGTTCAAT--G-AG-CC-A- 1406
Query 1287 ACAACTACCAAAAGATCCTATCAATGATTCAAGACAGGGCGGTTGGATCGATCCATTCCT 1346
|| | | |||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1407 AC--C-ATCAAAAGATCCTATCAATGATTCTAGACAAGGCGGGTGGATCGATCCATTCCT 1463
Query 1347 CGAGGGTTTGTGCAAGTATTTATCTTTTAGTAAGCTAAGAGTGAAAGCCGATTTGAAGCA 1406
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1464 CGAGGGTTTGTGCAAGTATTTGTCTTTTAGTAAGCTAAGAGTGAAAGCAGATTTGAAGCA 1523
Query 1407 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGTGCAATTGGGTTTGACCGTGATGGGGA 1466
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1524 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGCGCAATTGGGTTTGATCGTGATGGAGA 1583
Query 1467 GTTTTTCGCTACGGCAGGCGTCAACAAAAAGATTAAGATATTTGAATGCGAGTCGATAAT 1526
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1584 GTTTTTCGCCACGGCAGGCGTCAACAAAAAGATCAAGATATTCGAATGCGAGTCGATAAT 1643
Query 1527 AAAAGATGGGCGGGACATTCATTACCCGGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1586
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1644 AAAAGATGGCCGGGACATTCATTACCCTGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1703
Query 1587 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1763
Query 1647 AGTTCAGGTTTGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAAGAGCATGAGAA 1706
||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1764 GGTTCAAGTTTGGGATGTTGCAAGAAACCAGTTGGTTACAGAGATGAAGGAGCATGAGAA 1823
Query 1707 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCCAGCGGTAGTGA 1766
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1824 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGA 1883
Query 1767 CGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 TGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1943
Query 1827 AAAGGCAAACATATGTTGTGTCCAGTTTCCGTCAGAGTCGGGTCGGTCTTTAACATTTGG 1886
||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 1944 AAAGGCAAACATATGTTGTGTTCAGTTTCCATCAGAGACGGGTCGGTCTTTAGCATTTGG 2003
Query 1887 TTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAGCCCCAAGCTTCCTCTTTGTAC 1946
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2004 CTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAACCCCAAGCTTCCTCTTTGCAC 2063
Query 1947 AATGATTGGTCACAACAAGACCGTGAGTTATGTCAGATTTATGGATTCATCAACACTTGT 2006
||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 2064 AATGATTGGTCACCACAAGACCGTGAGTTATGTTAGATTTGTAGATTCATCAACACTTGT 2123
Query 2007 GTCGTCTTCTACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTGT 2066
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2124 TTCTTCTTCGACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTAT 2183
Query 2067 TAACGAAACACCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2126
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 TAATGAAACGCCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2243
Query 2127 ATCGGTCTCTGACGGGTATATAGCAACAGGCTCGGAGACTAATGAGGTTTTTGTGTACCA 2186
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2244 ATCAGTCTCTGACGGGTATATAGCAACAGGCTCTGAGACTAACGAGGTTTTTGTGTACCA 2303
Query 2187 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2363
Query 2247 TCTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCCTC 2306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2364 ACTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCGTC 2423
Query 2307 GACCTTAGTCGCTGCAAACTCCACTGGCAACATCAAGATTCTGGAGATGGTATGA 2361
||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 2424 GACCTTAGTTGCTGCAAACTCCACCGGCAATATCAAGATTTTGGAGATGGTATGA 2478
> AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-5172837
REVERSE LENGTH=3103
Length=3103
Score = 893 bits (483), Expect = 0.0
Identities = 875/1059 (83%), Gaps = 48/1059 (5%)
Strand=Plus/Plus
Query 1309 AATGATTCAAGAC-AGGGCGGTTGGATCGATCCATTCCTCGAGGGTTTGTGCAAG-TATT 1366
||||| || |||| |||| || ||||| ||||| ||||| |||||||||||| || ||||
Sbjct 1840 AATGACTCGAGACAAGGG-GGGTGGATAGATCCTTTCCTTGAGGGTTTGTGC-AGATATT 1897
Query 1367 TATCTTTTAGTAAGCTAAGAGTGAAAGCCGATTTGAAGCAAGGAGACTTGTTGAACTCGT 1426
|||| || ||| |||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 1898 TATCATTCAGTCAGCTAAGAGTGAAAGCTGATTTGAAACAAGGAGATTTGTTGAACTCTT 1957
Query 1427 CTAACCTTGTTTGTGCAATTGGGTTTGACCGTGATGGGGAGTTTTTCGCTACGGCAGGCG 1486
||||||| ||||| || ||| ||||||||| || || || || ||||| || || || |
Sbjct 1958 CTAACCTCGTTTGCGCTCTTGCGTTTGACCGAGAAGGAGAATTATTCGCCACTGCGGGAG 2017
Query 1487 TCAACAA-AAAGATTAAGATATTTGAATGCGAGTCGATAATAAAAGATGGGCGGGACATT 1545
||||||| ||| || |||||||| ||||| | || ||| |||| ||| ||||| |||
Sbjct 2018 TCAACAAGAAA-ATCAAGATATTCGAATGTAACTCCATAGTAAACGATAACCGGGATATT 2076
Query 1546 CATTACCCGGTTGTGGAACTT-GCTAGCCGGTCTAAGCTTAGTGGTATATGTTGGAACAG 1604
|| || ||||| |||||| || ||| | ||||| ||||| ||| || |||||||||||||
Sbjct 2077 CACTATCCGGTGGTGGAA-TTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAACAG 2135
Query 1605 TTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGTAGTTCAGGTTTGGGATGT 1664
||||| ||||||||| | ||||||||||||||||| || || |||||| | ||||||||
Sbjct 2136 CTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGATATGGGATGT 2195
Query 1665 TGCAAGAAGCCAGTTGGTTACAGAGATGAAAGAGCATGAGAAGCGTGTATGGTCCATCGA 1724
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 2196 TGCAAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCATCGA 2255
Query 1725 TTATT-CATCAGCAGATCCAACATTGTTAGCCAGCGGTAGTGACGATGGTTCGGTTAAGC 1783
| ||| |||||||||| || || ||| | || ||||| || ||||| | || || |
Sbjct 2256 T-ATTTCATCAGCAGACCCGACTTTGCTGGCTAGCGGAAG---CGATGAT--GG--AA-C 2306
Query 1784 TCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGACAAAGGCAAACATATGTT 1843
| ||||| | | || || | ||| |||||||||||||||| || |||| |
Sbjct 2307 -C-GGAGT-T-AG-CA-----TT-G----GGA-CCATCAAGACAAAGGCCAATGTATGCT 2350
Query 1844 GTGTCCAGTTTCCGTCAGAGTCGGGTCGGTCTTTAACATTTGGTTCAGCAGATCACAAAG 1903
||||||||||||| ||||| || || |||||| || |||||||||| |||||||| ||||
Sbjct 2351 GTGTCCAGTTTCCATCAGACTCCGGACGGTCTCTAGCATTTGGTTCTGCAGATCATAAAG 2410
Query 1904 TTTACTACTATGATCTAAGGAGCCCCAAGCTTCCTCTTTGTACAATGATTGGTCACAACA 1963
| || ||||| ||||| | | ||||||| ||||||| || |||||||||||||| | ||
Sbjct 2411 TGTATTACTACGATCTTCGAAACCCCAAGATTCCTCTGTGCACAATGATTGGTCATAGCA 2470
Query 1964 AGACCGTGAGTTATGTCA-GATTTATGGATTCATCAACACTTGTGTCGTCTTCTACGGAT 2022
|||| ||||||||||||| | ||| | |||||||| || |||||||| |||||||| |||
Sbjct 2471 AGACAGTGAGTTATGTCAAG-TTTGTAGATTCATCCACTCTTGTGTCCTCTTCTACTGAT 2529
Query 2023 AACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTG-TTAACGAAACACCTCT 2081
||||| |||||||| |||||||| || |||||| ||| || | |||| ||| | |||||
Sbjct 2530 AACACACTGAAGCTTTGGGACTTGTCGATGTCTGCTTCTGG-GATTAATGAATCCCCTCT 2588
Query 2082 TCACTCATTCA-TGGGACACACTAATGTTAA-GAACTTTGTTGGATTATCGGTCTCTGAC 2139
||||||||||| ||| |||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 2589 TCACTCATTCACTGG-ACACACTAAT-TTAAAGAACTTTGTTGGCTTATCGGTCTCTGAT 2646
Query 2140 GGGTATATAGCAACAGGCTCGGAGACTAATGAGGTTTTTGTGTACCACAAGGCATTTCCA 2199
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct 2647 GGGTATATAGCAACAGGCTCAGAGACTAACGAGGTTTTCGTGTACCACAAGGCATTCCCA 2706
Query 2200 ATGCCGGTTTTGTCGTACAAGTTCAA-AACTA-TAGACCCTGTGTC-GGATCTCGAAGTA 2256
||||| || ||||||||| |||||| ||| | | ||| || |||| || |||||||||
Sbjct 2707 ATGCCAGTGATGTCGTACATGTTCAACAAC-ACT-GACTCTATGTCTGG-TCTCGAAGTG 2763
Query 2257 GACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCCTCGACCTTAGTC 2316
|||||||| || ||||||||||| ||| |||||||||| |||||||| || || ||||||
Sbjct 2764 GACGATGCATCACAGTTCATATCTTCAATCTGCTGGCGAGGACAGTCGTCTACGTTAGTC 2823
Query 2317 GCTGCAAACTCCACTGGCAACATCAAGATTCTGGAGATG 2355
||||| ||||||| ||||||||| || ||||||||||||
Sbjct 2824 GCTGCTAACTCCAATGGCAACATAAAAATTCTGGAGATG 2862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117218272575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5