BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915009
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:811... 737 0.0
AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:1... 383 8e-106
> ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652
REVERSE LENGTH=408
Length=408
Score = 737 bits (399), Expect = 0.0
Identities = 405/408 (99%), Gaps = 0/408 (0%)
Strand=Plus/Plus
Query 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
Query 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
Query 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGT 180
Query 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
Query 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
Query 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATA 360
Query 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
> AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12366748-12370684
REVERSE LENGTH=3218
Length=3218
Score = 383 bits (207), Expect = 8e-106
Identities = 342/405 (84%), Gaps = 17/405 (4%)
Strand=Plus/Plus
Query 10 CCAAAAAGAACCAGA-TTTC-GTAAACAACATCGAGGAAG-ACT-A-AAAGGAATATCTT 64
|||| ||||| || | |||| | ||||| ||||||||||| | | | |||||| ||||||
Sbjct 2570 CCAAGAAGAA-CAAAGTTTCAG-AAACATCATCGAGGAAGAATTAATAAAGGAGTATCTT 2627
Query 65 CTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGA 124
||| ||| |||| | || | | |||||||||||||||||||||||||| |||||||
Sbjct 2628 CTC-AGGG----GTATAT-TTGTAGTAGATATGCTCTTCAAACACTTGAACCAGCTTGGA 2681
Query 125 TCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGTG 184
|||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 2682 TCACTTCTAGACAAATAGAAGCAGGACGACGAGCAATGACACGAAATATAGGACGTGGTT 2741
Query 185 GAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACGC 244
|| || | || | ||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 2742 TAACTGTTCGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCTCCTGAAACGC 2801
Query 245 GTATGGGTTC-TGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGTAAA 303
||||||| || |||||||||| | || | || ||||||||||||||||||||||||||||
Sbjct 2802 GTATGGG-TCGTGGGAAAGGAGCTCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAAA 2860
Query 304 ATCCTTTATGAAATGGGTGGTGTACCCGAAAATA-TAGCCAGAAAAGCTATTTCAATAGC 362
||| ||||||||||||||||||| ||||||| | |||| ||| |||||||||| |||||
Sbjct 2861 ATCATTTATGAAATGGGTGGTGTTTCCGAAAA-AGTAGCTAGAGAAGCTATTTCTATAGC 2919
Query 363 GGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATA 407
|||||||| ||||| ||||||| ||||||| |||||| ||||
Sbjct 2920 CGCATCAAAGTTGCCTGCAAAAACCAAATTCATCATTTCTAAATA 2964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5