BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915023
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ... 689 0.0
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ... 529 1e-149
> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014
Score = 689 bits (373), Expect = 0.0
Identities = 395/406 (97%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAATTTGGTGTTACTTGGAGATGTTGGA 60
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
Query 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
Query 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG 180
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348
Query 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408
Query 241 AGAGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468
Query 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGATAACCCTAATATGGTCATGGCCCTT 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528
Query 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAG 406
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGCAG 574
> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450
FORWARD LENGTH=1222
Length=1222
Score = 529 bits (286), Expect = 1e-149
Identities = 367/407 (90%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAATTTGGTGTTACTTGGAGATGTTGG 59
|||||| || |||||||||||| ||| |||||||| ||||| ||||| |||||||||||
Sbjct 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
Query 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
Query 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAA 179
||||||||||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA 408
Query 180 GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA 239
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 409 GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA 468
Query 240 CAGAGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAG 299
||| ||||| |||||||| || ||||||||||| |||| ||||| ||||| ||||||||
Sbjct 469 CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG 528
Query 300 GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGATAACCCTAATATGGTCATGGCCCT 359
||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 529 GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT 588
Query 360 TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAG 406
||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 589 TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTGTCTGCAG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5