BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915184
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12800.1 | Symbols: PSAL | photosystem I subunit l | chr4:75... 1037 0.0
> AT4G12800.1 | Symbols: PSAL | photosystem I subunit l | chr4:7521322-7522670
FORWARD LENGTH=984
Length=984
Score = 1037 bits (561), Expect = 0.0
Identities = 628/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 207
Query 61 CTTTCTCGGCGTCTCGCTGTCCCGAAGGGCATCTCCGGCGCTCCTTTCGGTGTTTCTCCG 120
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 208 CTTTCTCAGCGTCTCGCCGTCCCGAAGGGCATCTCCGGTGCTCCTTTCGGTGTTTCTCCG 267
Query 121 ACCAAAAGAGTCTCTTCCTTCACCGTCCGAGCTGTTAAATCCGACAAGCCAACATTCCAA 180
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 268 ACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGACAACATTCCAA 327
Query 181 GTGA-TTCAACCAATCAACGGCGATCCATTCATCGGAAGCTTGGAAACTCCGGTCACATC 239
|| | |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 328 GT-AGTTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATC 386
Query 240 AAGCCCCTTGATCGCATGGTACCTTTCTAACCTCCCCGGTTACCGTACTGCCGTCAACCC 299
|||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 387 AAGCCCATTGATCGCGTGGTACCTTTCCAACCTCCCTGGATACCGTACCGCCGTCAACCC 446
Query 300 TCTCCTCCGTGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCTCCTCCGCGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 506
Query 360 CAAGGCTGGTCCTTTAAGGAACACTGCTTATGCTGGGACAGCCGGGTCTTTGGCCGCGGC 419
||| ||||| || ||||||||||||||||| || ||| ||||||||||||| ||||||||
Sbjct 507 CAAAGCTGGCCCATTAAGGAACACTGCTTACGCCGGGTCAGCCGGGTCTTTAGCCGCGGC 566
Query 420 TGGGCTAGTAGTCATCCTCAGCATGTGCCTCACCATCTATGGTATCTCTTCATTCAAGGA 479
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 567 TGGGCTGGTAGTCATCCTCAGCATGTGCCTCACCATCTACGGTATCTCTTCTTTCAAGGA 626
Query 480 AGGAGAGCCGTCGATCGCACCGAGTTTGACTTTGACCGGGCGGAAGAAGCAGCCTGACCA 539
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 627 AGGAGAGCCATCGATCGCACCGAGTTTGACTTTGACTGGGCGGAAGAAGCAGCCTGACCA 686
Query 540 GCTTCAAACGGCTGAAGGATGGGCTAAGTTCACAGGAGGGTTCTTCTTTGGAGGGATCTC 599
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 687 GCTTCAAACGGCTGATGGATGGGCTAAGTTCACTGGAGGATTCTTCTTTGGAGGGATCTC 746
Query 600 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTACGTCAAGTA 659
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 747 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTTCGTCAAGTA 806
Query 660 A 660
|
Sbjct 807 A 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5